RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	MX2	P20592	715 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	PML	P29590	882 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	GCLM	P48507	274 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	E2F5	Q15329	346 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	KYAT1	Q16773	422 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	TAF1D	Q9H5J8	278 aa	Predicted RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	NOP53	Q9NZM5	478 aa	Known RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	LRRC7	Q96NW7	1537 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	PXDNL	A1KZ92	1463 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	UBE4B	O95155	1302 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	USP17L10	C9JJH3	530 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	NCF2	P19878	526 aa	Predicted RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	COPB2	P35606	906 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	MAGEA9	P43362	315 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	PSMC5	P62195	406 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	MDM2	Q00987	491 aa	Predicted RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	EXOSC10	Q01780	885 aa	Known RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	DHX34	Q14147	1143 aa	Known RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	RYBP	Q8N488	228 aa	Predicted RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	PSPC1	Q8WXF1	523 aa	Known RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	CCSER1	Q9C0I3	900 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	SPATS2L	Q9NUQ6	558 aa	Known RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	SPHKAP	Q2M3C7	1700 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	POTEB3	A0JP26	581 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	POTEC	B2RU33	542 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	MMP10	P09238	476 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	GPC3	P51654	580 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	EPHB1	P54762	984 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	FOXO4	P98177	505 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	LLGL1	Q15334	1064 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	AP1AR	Q63HQ0	302 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	KRT80	Q6KB66	452 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	POTEB	Q6S5H4	581 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	SHC4	Q6S5L8	630 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	TRIM67	Q6ZTA4	783 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	THEM5	Q8N1Q8	247 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	RFFL	Q8WZ73	363 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	ELAC2	Q9BQ52	826 aa	Known RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	TPX2	Q9ULW0	747 aa	Known RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	TNS3	Q68CZ2	1445 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	RNF17	Q9BXT8	1623 aa	Known RBP	12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	TTC26	A0AVF1	554 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	PYGB	P11216	843 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	TMPRSS15	P98073	1019 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	THNSL1	Q8IYQ7	743 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	BANK1	Q8NDB2	785 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	NRBF2	Q96F24	287 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	CCDC138	Q96M89	665 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	MRFAP1	Q9Y605	127 aa		12.32	□□□□□ -0.44
SYNE2-208	ENST00000553289	USP17L15	C9J2P7	530 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	USP17L13	C9JLJ4	530 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	USP17L11	C9JVI0	530 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	USP17L18	D6R9N7	530 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	USP17L22	D6RA61	530 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	USP17L17	D6RBQ6	530 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	USP17L19	D6RCP7	530 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	USP17L20	D6RJB6	530 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	NVL	O15381	856 aa	Known RBP	12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	SLC16A3	O15427	465 aa	Known RBP	12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	PPP2R2A	P63151	447 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	USP17L24	Q0WX57	530 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	DRAP1	Q14919	205 aa	Predicted RBP	12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	PDXDC1	Q6P996	788 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	USP17L6P	Q6QN14	398 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	EPM2AIP1	Q7L775	607 aa	Predicted RBP	12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	EEPD1	Q7L9B9	569 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	BEST2	Q8NFU1	509 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	TUFT1	Q9NNX1	390 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	UBN1	Q9NPG3	1134 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	LIMA1	Q9UHB6	759 aa	Known RBP	12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	DENND3	A2RUS2	1198 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	PDXK	O00764	312 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	RPSA	P08865	295 aa	Known RBP	12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	NUP85	Q9BW27	656 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	APOBEC2	Q9Y235	224 aa	Known RBP	12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	INPP1	P49441	399 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	QRICH1	Q2TAL8	776 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	TMEM270	Q6UE05	265 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	RHOT1	Q8IXI2	618 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	ZNF302	Q9NR11	478 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	HERC5	Q9UII4	1024 aa	Known RBP	12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	STAP1	Q9ULZ2	295 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	WDR91	A4D1P6	747 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	EPHA7	Q15375	998 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	TMTC4	Q5T4D3	741 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	ZNF512B	Q96KM6	892 aa	Predicted RBP	12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	MAGEB5	Q9BZ81	275 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	WDR70	Q9NW82	654 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	ITIH6	Q6UXX5	1313 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	SLC16A4	O15374	487 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	SRGAP2	O75044	1071 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	SOX5	P35711	763 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	GGCX	P38435	758 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	PDCL	Q13371	301 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	CDO1	Q16878	200 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	CCDC144B	Q3MJ40	725 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	ZNF568	Q3ZCX4	644 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	TADA2B	Q86TJ2	420 aa		12.31	□□□□□ -0.44
SYNE2-208	ENST00000553289	ADGRF4	Q8IZF3	695 aa		12.31	□□□□□ -0.44

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