RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 NPHS1O60500 1241 aa3.18□□□□□ -1.9
PTCH1-223ENST00000551623 ITGA4P13612 1032 aa3.18□□□□□ -1.9
PTCH1-223ENST00000551623 NPR1P16066 1061 aa3.18□□□□□ -1.9
PTCH1-223ENST00000551623 EIF4A3P38919 411 aaKnown RBP3.18□□□□□ -1.9
PTCH1-223ENST00000551623 RBM10P98175 930 aaKnown RBP3.18□□□□□ -1.9
PTCH1-223ENST00000551623 KIF23Q02241 960 aaPredicted RBP3.18□□□□□ -1.9
PTCH1-223ENST00000551623 RRS1Q15050 365 aaKnown RBP3.18□□□□□ -1.9
PTCH1-223ENST00000551623 CRY2Q49AN0 593 aa3.18□□□□□ -1.9
PTCH1-223ENST00000551623 AXDND1Q5T1B0 1012 aaPredicted RBP3.18□□□□□ -1.9
PTCH1-223ENST00000551623 GIMAP8Q8ND71 665 aaPredicted RBP3.18□□□□□ -1.9
PTCH1-223ENST00000551623 PLEKHO2Q8TD55 490 aa3.18□□□□□ -1.9
PTCH1-223ENST00000551623 SEC14L1Q92503 715 aa3.18□□□□□ -1.9
PTCH1-223ENST00000551623 LRRC37BQ96QE4 947 aa3.18□□□□□ -1.9
PTCH1-223ENST00000551623 MMRN2Q9H8L6 949 aa3.18□□□□□ -1.9
PTCH1-223ENST00000551623 ZNF277Q9NRM2 450 aaPredicted RBP3.18□□□□□ -1.9
PTCH1-223ENST00000551623 SUPT16HQ9Y5B9 1047 aaKnown RBP3.18□□□□□ -1.9
PTCH1-223ENST00000551623 ZNF609O15014 1411 aa3.18□□□□□ -1.9
PTCH1-223ENST00000551623 KIF7Q2M1P5 1343 aa3.18□□□□□ -1.9
PTCH1-223ENST00000551623 LAMA3Q16787 3333 aa3.18□□□□□ -1.9
PTCH1-223ENST00000551623 CEP290O15078 2479 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 ROCK2O75116 1388 aaKnown RBP3.17□□□□□ -1.9
PTCH1-223ENST00000551623 C7orf72A4D263 438 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 STXBP3O00186 592 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 RAMP2O60895 175 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 PAMP19021 973 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 MAKP20794 623 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 TM4SF4P48230 202 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 SEPHS1P49903 392 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 EIF6P56537 245 aaKnown RBP3.17□□□□□ -1.9
PTCH1-223ENST00000551623 HUNKP57058 714 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 FKBP1BP68106 108 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 GRM1Q13255 1194 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 TUBA3CQ13748 450 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 PPP2R5DQ14738 602 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 AMOTQ4VCS5 1084 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 SEZ6Q53EL9 994 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 FNDC7Q5VTL7 733 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 TBC1D9BQ66K14 1250 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 TUBA3EQ6PEY2 450 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 TRMT10BQ6PF06 316 aaKnown RBP3.17□□□□□ -1.9
PTCH1-223ENST00000551623 ERICH6Q7L0X2 663 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 ZNF627Q7L945 461 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 MILR1Q7Z6M3 343 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 RALYLQ86SE5 291 aaKnown RBP3.17□□□□□ -1.9
PTCH1-223ENST00000551623 FUKQ8N0W3 1084 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 REXO1Q8N1G1 1221 aaKnown RBP3.17□□□□□ -1.9
PTCH1-223ENST00000551623 CNBD1Q8NA66 436 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 IL17DQ8TAD2 202 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 ZNF483Q8TF39 744 aaPredicted RBP3.17□□□□□ -1.9
PTCH1-223ENST00000551623 JDP2Q8WYK2 163 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 ZNF622Q969S3 477 aaKnown RBP eCLIP3.17□□□□□ -1.9
PTCH1-223ENST00000551623 WRNIP1Q96S55 665 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 YIPF4Q9BSR8 244 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 GLIS2Q9BZE0 524 aaPredicted RBP3.17□□□□□ -1.9
PTCH1-223ENST00000551623 ZBTB1Q9Y2K1 713 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 STXBP5LQ9Y2K9 1186 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 DIS3Q9Y2L1 958 aaKnown RBP3.17□□□□□ -1.9
PTCH1-223ENST00000551623 ZNF451Q9Y4E5 1061 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 SLC4A7Q9Y6M7 1214 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 UBR2Q8IWV8 1755 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 SSC5DA1L4H1 1573 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 UNC80Q8N2C7 3258 aa3.17□□□□□ -1.9
PTCH1-223ENST00000551623 NPC1L1Q9UHC9 1359 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 PIEZO1Q92508 2521 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 BRCA2P51587 3418 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 TRBV23OR9-2A0A075B6M9 112 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 A0A087WZG4 1122 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 NPHP3-ACAD11A0A0J9YXS1 232 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 H0YGN5 161 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 ERBB2P04626 1255 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 TP53P04637 393 aaPredicted RBP3.16□□□□□ -1.9
PTCH1-223ENST00000551623 ACO1P21399 889 aaKnown RBP3.16□□□□□ -1.9
PTCH1-223ENST00000551623 BMP5P22003 454 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 PLA2G5P39877 138 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 SLC6A11P48066 632 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 MRPS21P82921 87 aaKnown RBP3.16□□□□□ -1.9
PTCH1-223ENST00000551623 COL10A1Q03692 680 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 ZYXQ15942 572 aaKnown RBP3.16□□□□□ -1.9
PTCH1-223ENST00000551623 CLEC4GQ6UXB4 293 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 Q6ZSN1 163 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 UBE2Q1Q7Z7E8 422 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 TAX1BP1Q86VP1 789 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 RASAL3Q86YV0 1011 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 SLITRK4Q8IW52 837 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 SYNE4Q8N205 404 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 TESK2Q96S53 571 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 PRRX2Q99811 253 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 RTFDC1Q9BY42 306 aaPredicted RBP3.16□□□□□ -1.9
PTCH1-223ENST00000551623 GBA2Q9HCG7 927 aaPredicted RBP3.16□□□□□ -1.9
PTCH1-223ENST00000551623 MARCH2Q9P0N8 246 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 BACE2Q9Y5Z0 518 aa3.16□□□□□ -1.9
PTCH1-223ENST00000551623 LAMB1P07942 1786 aa3.15□□□□□ -1.9
PTCH1-223ENST00000551623 IBTKQ9P2D0 1353 aaPredicted RBP3.15□□□□□ -1.9
PTCH1-223ENST00000551623 CAMTA2O94983 1202 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 ITGB6P18564 788 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 ALDH1B1P30837 517 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 IL6STP40189 918 aaPredicted RBP3.15□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF165P49910 485 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 ST5P78524 1137 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 KRTAP5-11Q6L8G4 156 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms