RNA–Protein interactions for RNA: ENST00000550051.5

TRAFD1-207, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene TRAFD1, Length 1,003 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-207ENST00000550051 USTQ9Y2C2 406 aa11.14□□□□□ -0.63
TRAFD1-207ENST00000550051 IRAK3Q9Y616 596 aa11.14□□□□□ -0.63
TRAFD1-207ENST00000550051 PLXNA3P51805 1871 aa11.14□□□□□ -0.63
TRAFD1-207ENST00000550051 CACNA1HO95180 2353 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 KLF18A0A0U1RQI7 1052 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 GOLGA8AA7E2F4 631 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 GOLGA8BA8MQT2 603 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 WDR64B1ANS9 1081 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 H0Y858 1186 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 ADAMTS3O15072 1205 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 PRPF3O43395 683 aaKnown RBP11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 EDIL3O43854 480 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 BRD1O95696 1058 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 PDGFBP01127 241 aaPredicted RBP11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 HMGB1P09429 215 aaKnown RBP11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 GNA11P29992 359 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 PBX3P40426 434 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 USP11P51784 963 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 CLCN5P51795 746 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 POLGP54098 1239 aaPredicted RBP11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 GIT2Q14161 759 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 TARBP2Q15633 366 aaKnown RBP11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 ADCK5Q3MIX3 580 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 PRR16Q569H4 304 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 ATAT1Q5SQI0 421 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 TRMT1LQ7Z2T5 733 aaKnown RBP11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 REXO1Q8N1G1 1221 aaKnown RBP11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 CCDC12Q8WUD4 166 aaPredicted RBP11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 LENG9Q96B70 501 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 MS4A3Q96HJ5 214 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 RIT2Q99578 217 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 MRPL9Q9BYD2 267 aaKnown RBP11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 NIFKQ9BYG3 293 aaKnown RBP11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 FAM86C1Q9NVL1 165 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 TCEAL9Q9UHQ7 104 aa11.13□□□□□ -0.63
TRAFD1-207ENST00000550051 C2CD4DB7Z1M9 353 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 OATP04181 439 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 SKIP12755 728 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 SFNP31947 248 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 FOXK2Q01167 660 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 KRT32Q14532 448 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 KIAA1841Q6NSI8 718 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 DDX53Q86TM3 631 aaKnown RBP11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 FBXL16Q8N461 479 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 LRRC71Q8N4P6 559 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 BICD2Q8TD16 824 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 HELQQ8TDG4 1101 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 SLC22A17Q8WUG5 538 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 TCEANC2Q96MN5 208 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 DISC1Q9NRI5 854 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 DZANK1Q9NVP4 752 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 CDH22Q9UJ99 828 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 SAMM50Q9Y512 469 aa11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 ZFHX2Q9C0A1 2572 aaPredicted RBP11.12□□□□□ -0.63
TRAFD1-207ENST00000550051 IGKV6-21A0A0C4DH24 114 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 MSH4O15457 936 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 ZNF623O75123 536 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 CTSAP10619 480 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 SP100P23497 879 aaPredicted RBP11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 NBL1P41271 181 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 PHKA2P46019 1235 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 TBC1D8BQ0IIM8 1120 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 ASTLQ6HA08 431 aaPredicted RBP11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 VPS52Q8N1B4 723 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 TMEM105Q8N8V8 129 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 RNF169Q8NCN4 708 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 RDM1Q8NG50 284 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 SLC5A5Q92911 643 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 TMEM169Q96HH4 297 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 CEP89Q96ST8 783 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 GCOM2Q9BZD3 368 aaPredicted RBP11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 ZBP1Q9H171 429 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 LIMD1Q9UGP4 676 aa11.11□□□□□ -0.63
TRAFD1-207ENST00000550051 CFAP54Q96N23 3096 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 NT5C1B-RDH14C9J2C7 533 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 STBD1O95210 358 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 GALTP07902 379 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 FGFR4P22455 802 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 DNM2P50570 870 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 METAP2P50579 478 aaKnown RBP eCLIP11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 JAK3P52333 1124 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 PRKCEQ02156 737 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 XKR3Q5GH77 459 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 BMP2KLQ5H9B9 411 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 RARS2Q5T160 578 aaKnown RBP11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 ASCL5Q7RTU5 278 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 PPFIBP1Q86W92 1011 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 C12orf76Q8N812 135 aaPredicted RBP11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 NLRP7Q8WX94 980 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 KCNB2Q92953 911 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 IGSF21Q96ID5 467 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 CCDC136Q96JN2 1154 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 ZNF668Q96K58 619 aaPredicted RBP11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 YTHDC1Q96MU7 727 aaKnown RBP11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 INO80BQ9C086 356 aaPredicted RBP11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 NRDE2Q9H7Z3 1164 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 CYP26B1Q9NR63 512 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 STK39Q9UEW8 545 aa11.1□□□□□ -0.63
TRAFD1-207ENST00000550051 PTPRZ1P23471 2315 aaPredicted RBP11.09□□□□□ -0.63
TRAFD1-207ENST00000550051 NID2Q14112 1375 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms