RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CYP4F22Q6NT55 531 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 ESRP1Q6NXG1 681 aaKnown RBP5.53□□□□□ -1.52
VPS29-205ENST00000548539 ZBTB46Q86UZ6 589 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 TAX1BP1Q86VP1 789 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 IFNL2Q8IZJ0 200 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 DLG3Q92796 817 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 ERCC4Q92889 916 aaPredicted RBP5.53□□□□□ -1.52
VPS29-205ENST00000548539 TSR2Q969E8 191 aaKnown RBP5.53□□□□□ -1.52
VPS29-205ENST00000548539 ZG16BQ96DA0 208 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 CRAMP1Q96RY5 1269 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 KCNH7Q9NS40 1196 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 TOPORSQ9NS56 1045 aaPredicted RBP5.53□□□□□ -1.52
VPS29-205ENST00000548539 NOC2LQ9Y3T9 749 aaKnown RBP5.53□□□□□ -1.52
VPS29-205ENST00000548539 NUB1Q9Y5A7 615 aa5.53□□□□□ -1.52
VPS29-205ENST00000548539 SHTN1A0MZ66 631 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 RASSF10A6NK89 507 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 C4BPAP04003 597 aaKnown RBP5.52□□□□□ -1.53
VPS29-205ENST00000548539 COL6A1P12109 1028 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 LSP1P33241 339 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 RAB27AP51159 221 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 EPHA5P54756 1037 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 EPHB1P54762 984 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 AGBL4Q5VU57 503 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 CC2D1AQ6P1N0 951 aaPredicted RBP5.52□□□□□ -1.53
VPS29-205ENST00000548539 Q6ZUG5 572 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 WDR75Q8IWA0 830 aaKnown RBP5.52□□□□□ -1.53
VPS29-205ENST00000548539 CBARPQ8N350 705 aaPredicted RBP5.52□□□□□ -1.53
VPS29-205ENST00000548539 PHOSPHO1Q8TCT1 267 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 RTF1Q92541 710 aaKnown RBP5.52□□□□□ -1.53
VPS29-205ENST00000548539 HOOK2Q96ED9 719 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 ZMAT4Q9H898 229 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 ACSS2Q9NR19 701 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 WASF3Q9UPY6 502 aa5.52□□□□□ -1.53
VPS29-205ENST00000548539 ACOT7O00154 380 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 PLSCR1O15162 318 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 FOXP2O15409 715 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 KDM1AO60341 852 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 KLHL18O94889 574 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 FBXO21O94952 628 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 MMEP08473 750 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 GJA4P35212 333 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 KLF1Q13351 362 aaPredicted RBP5.51□□□□□ -1.53
VPS29-205ENST00000548539 PPP2R5AQ15172 486 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 PAN2Q504Q3 1202 aaKnown RBP5.51□□□□□ -1.53
VPS29-205ENST00000548539 CATSPEREQ5SY80 951 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 C1orf210Q8IVY1 113 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 TRIM48Q8IWZ4 208 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 SCYL1Q96KG9 808 aa5.51□□□□□ -1.53
VPS29-205ENST00000548539 WASHC2AQ641Q2 1341 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 GOLGA8AA7E2F4 631 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 GOLGA8BA8MQT2 603 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 AKAP10O43572 662 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 CYP17A1P05093 508 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 ACO1P21399 889 aaKnown RBP5.5□□□□□ -1.53
VPS29-205ENST00000548539 CD40P25942 277 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 PHC1P78364 1004 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 FAPQ12884 760 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 HNRNPA0Q13151 305 aaKnown RBP5.5□□□□□ -1.53
VPS29-205ENST00000548539 PDCD1Q15116 288 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 PCBP2Q15366 365 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS29-205ENST00000548539 NFE2Q16621 373 aaPredicted RBP5.5□□□□□ -1.53
VPS29-205ENST00000548539 KRTAP15-1Q3LI76 137 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 PGM2L1Q6PCE3 622 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 RASSF3Q86WH2 238 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 ZNF610Q8N9Z0 462 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 TGFBRAP1Q8WUH2 860 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 CHMP4CQ96CF2 233 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 FUBP3Q96I24 572 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS29-205ENST00000548539 AJUBAQ96IF1 538 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 PLEKHG4BQ96PX9 1271 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 ZDHHC5Q9C0B5 715 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 ZIM2Q9NZV7 527 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 MSRAQ9UJ68 235 aa5.5□□□□□ -1.53
VPS29-205ENST00000548539 K7ESF4 209 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 H2AFYO75367 372 aaKnown RBP5.49□□□□□ -1.53
VPS29-205ENST00000548539 SCGB1D2O95969 90 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 CHGBP05060 677 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 CCND1P24385 295 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 SDHAP31040 664 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 PIN1Q13526 163 aaPredicted RBP5.49□□□□□ -1.53
VPS29-205ENST00000548539 INAVAQ3KP66 663 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 HSP90AB2PQ58FF8 381 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 PHF19Q5T6S3 580 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 GPR155Q7Z3F1 870 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 FUKQ8N0W3 1084 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 HIPK4Q8NE63 616 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 ASB15Q8WXK1 588 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 NEIL1Q96FI4 390 aaPredicted RBP5.49□□□□□ -1.53
VPS29-205ENST00000548539 C16orf92Q96LL3 132 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 GBP4Q96PP9 640 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 RTFDC1Q9BY42 306 aaPredicted RBP5.49□□□□□ -1.53
VPS29-205ENST00000548539 DLL4Q9NR61 685 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 RBPJLQ9UBG7 517 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 IP6K2Q9UHH9 426 aa5.49□□□□□ -1.53
VPS29-205ENST00000548539 NOB1Q9ULX3 412 aaKnown RBP5.49□□□□□ -1.53
VPS29-205ENST00000548539 PRAMEF22A3QJZ6 481 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 FZD9O00144 591 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 TSPAN6O43657 245 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 ADH4P08319 380 aa5.48□□□□□ -1.53
VPS29-205ENST00000548539 C1SP09871 688 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms