RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 DTHD1Q6ZMT9 781 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 SRGAP1Q7Z6B7 1085 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 FERMT3Q86UX7 667 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 KSR1Q8IVT5 923 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 CMTR2Q8IYT2 770 aaKnown RBP13.22□□□□□ -0.29
YBX3-217ENST00000546164 NLRP4Q96MN2 994 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 CCDC43Q96MW1 224 aaKnown RBP13.22□□□□□ -0.29
YBX3-217ENST00000546164 TRAIPQ9BWF2 469 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 CERS4Q9HA82 394 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 CHST12Q9NRB3 414 aa13.22□□□□□ -0.29
YBX3-217ENST00000546164 VPS37CA5D8V6 355 aaPredicted RBP13.21□□□□□ -0.29
YBX3-217ENST00000546164 LPXNO60711 386 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 ZSCAN20P17040 1043 aaPredicted RBP13.21□□□□□ -0.29
YBX3-217ENST00000546164 ARL2P36404 184 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 CCT6AP40227 531 aaKnown RBP13.21□□□□□ -0.29
YBX3-217ENST00000546164 ECM1Q16610 540 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 IFNLR1Q8IU57 520 aaPredicted RBP13.21□□□□□ -0.29
YBX3-217ENST00000546164 FIBCD1Q8N539 461 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 KCTD17Q8N5Z5 321 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 MCPH1Q8NEM0 835 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 CLP1Q92989 425 aaKnown RBP13.21□□□□□ -0.29
YBX3-217ENST00000546164 C17orf80Q9BSJ5 609 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 BMP2KQ9NSY1 1161 aaPredicted RBP13.21□□□□□ -0.29
YBX3-217ENST00000546164 TMEM161AQ9NX61 479 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 DACT1Q9NYF0 836 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 LMCD1Q9NZU5 365 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 RWDD3Q9Y3V2 267 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 UNC80Q8N2C7 3258 aa13.21□□□□□ -0.29
YBX3-217ENST00000546164 A0A0U1RQF3 1178 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 RFXAPO00287 272 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 CSDE1O75534 798 aaKnown RBP13.2□□□□□ -0.3
YBX3-217ENST00000546164 FGFR4P22455 802 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 PTENP60484 403 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 RESTQ13127 1097 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 GRB10Q13322 594 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 BTG3Q14201 252 aaPredicted RBP13.2□□□□□ -0.3
YBX3-217ENST00000546164 PCBP1Q15365 356 aaKnown RBP eCLIP13.2□□□□□ -0.3
YBX3-217ENST00000546164 EPC2Q52LR7 807 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 KRT79Q5XKE5 535 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 HSCBQ8IWL3 235 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 RNF149Q8NC42 400 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 SNX29Q8TEQ0 813 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 MMTAG2Q9BU76 263 aaKnown RBP13.2□□□□□ -0.3
YBX3-217ENST00000546164 NFKBIZQ9BYH8 718 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 LRFN2Q9ULH4 789 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 MTMR6Q9Y217 621 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 PCDHB7Q9Y5E2 793 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 MTCH2Q9Y6C9 303 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 ARID2Q68CP9 1835 aa13.2□□□□□ -0.3
YBX3-217ENST00000546164 PRRC2BQ5JSZ5 2229 aaKnown RBP13.2□□□□□ -0.3
YBX3-217ENST00000546164 A0A087WWV3 80 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 ARHGEF35A5YM69 484 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 PP2D1A8MPX8 630 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 C5orf67F2Z3F1 127 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 HOXA2O43364 376 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 SLC26A4O43511 780 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 GTPBP6O43824 516 aaPredicted RBP13.19□□□□□ -0.3
YBX3-217ENST00000546164 USO1O60763 962 aaKnown RBP13.19□□□□□ -0.3
YBX3-217ENST00000546164 RB1P06400 928 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 SRGAP2CP0DJJ0 459 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 CYP11B2P19099 503 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 IGFBP4P22692 258 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 GLRA2P23416 452 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 PHKA2P46019 1235 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 CAPSQ13938 189 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 TFDP1Q14186 410 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 HYIQ5T013 277 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 PADI6Q6TGC4 694 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 CATSPER4Q7RTX7 472 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 ZNF598Q86UK7 904 aaKnown RBP13.19□□□□□ -0.3
YBX3-217ENST00000546164 ECHDC2Q86YB7 292 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 TMEM192Q8IY95 271 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 FBXO22Q8NEZ5 403 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 ASAP3Q8TDY4 903 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 AK8Q96MA6 479 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 AGPAT5Q9NUQ2 364 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 MTUS1Q9ULD2 1270 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 KIAA1024Q9UPX6 916 aa13.19□□□□□ -0.3
YBX3-217ENST00000546164 VWA3AA6NCI4 1184 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 H3BNC9 293 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 STX6O43752 255 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 ZNF623O75123 536 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 EOMESO95936 686 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 PDIA4P13667 645 aaKnown RBP13.18□□□□□ -0.3
YBX3-217ENST00000546164 BMPR1AP36894 532 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 RSPH1Q8WYR4 309 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 PLVAPQ9BX97 442 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 TMEM117Q9H0C3 514 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 POLR3FQ9H1D9 316 aaPredicted RBP13.18□□□□□ -0.3
YBX3-217ENST00000546164 BHMT2Q9H2M3 363 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 ZSCAN16Q9H4T2 348 aaPredicted RBP13.18□□□□□ -0.3
YBX3-217ENST00000546164 MINDY3Q9H8M7 445 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 DDX19AQ9NUU7 478 aaKnown RBP13.18□□□□□ -0.3
YBX3-217ENST00000546164 RNF19AQ9NV58 838 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 DNM3Q9UQ16 869 aa13.18□□□□□ -0.3
YBX3-217ENST00000546164 PIN4Q9Y237 131 aaKnown RBP13.18□□□□□ -0.3
YBX3-217ENST00000546164 MORC2Q9Y6X9 1032 aaPredicted RBP13.18□□□□□ -0.3
YBX3-217ENST00000546164 EYA4O95677 639 aa13.17□□□□□ -0.3
YBX3-217ENST00000546164 SKIP12755 728 aa13.17□□□□□ -0.3
YBX3-217ENST00000546164 ATF7P17544 494 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms