RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 GPC3P51654 580 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 ERVFC1P60507 584 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 RBM10P98175 930 aaKnown RBP9.55□□□□□ -0.88
USP28-215ENST00000545608 PRKCEQ02156 737 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 SSRP1Q08945 709 aaKnown RBP9.55□□□□□ -0.88
USP28-215ENST00000545608 LRCH2Q5VUJ6 765 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 LRRC55Q6ZSA7 311 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 COLGALT1Q8NBJ5 622 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 MICAL1Q8TDZ2 1067 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 PPP2R3CQ969Q6 453 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 FAM167AQ96KS9 214 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 AIFM3Q96NN9 605 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 CASD1Q96PB1 797 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 MAP7D2Q96T17 732 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 RIT2Q99578 217 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 TEKT3Q9BXF9 490 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 ELAC1Q9H777 363 aaKnown RBP9.55□□□□□ -0.88
USP28-215ENST00000545608 TLE6Q9H808 572 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 AAASQ9NRG9 546 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 BARX2Q9UMQ3 279 aaPredicted RBP9.55□□□□□ -0.88
USP28-215ENST00000545608 PCDHA4Q9UN74 947 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 CYP3A7-CYP3A51PA0A087WV96 503 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 TMEM150BA6NC51 233 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 M0R2N6 131 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 FSCN2O14926 492 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 TDP2O95551 362 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 ZSCAN20P17040 1043 aaPredicted RBP9.54□□□□□ -0.88
USP28-215ENST00000545608 FGFR4P22455 802 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 CYP3A7P24462 503 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 TMOD1P28289 359 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 SFNP31947 248 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 JAK3P52333 1124 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 UBE3AQ05086 875 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 COASYQ13057 564 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 DRP2Q13474 957 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 TARBP2Q15633 366 aaKnown RBP9.54□□□□□ -0.88
USP28-215ENST00000545608 NPY5RQ15761 445 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 Q4G0T1 1027 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 ARSIQ5FYB1 569 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 B3GNT9Q6UX72 402 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 MIER3Q7Z3K6 550 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 ECHDC2Q86YB7 292 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 RNF135Q8IUD6 432 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 TRIM22Q8IYM9 498 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 THNSL1Q8IYQ7 743 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 BLIDQ8IZY5 108 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 TTC13Q8NBP0 860 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 VN1R2Q8NFZ6 395 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 ZNF274Q96GC6 653 aaPredicted RBP9.54□□□□□ -0.88
USP28-215ENST00000545608 CEP89Q96ST8 783 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 SH2D3AQ9BRG2 576 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 UPF3BQ9BZI7 483 aaKnown RBP9.54□□□□□ -0.88
USP28-215ENST00000545608 TMEM117Q9H0C3 514 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 TLR9Q9NR96 1032 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 MUTYHQ9UIF7 546 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 ATG2AQ2TAZ0 1938 aa9.54□□□□□ -0.88
USP28-215ENST00000545608 LOXHD1Q8IVV2 1947 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 CPLX1O14810 134 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 EPB41L2O43491 1005 aaKnown RBP9.53□□□□□ -0.88
USP28-215ENST00000545608 DTNBO60941 627 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 CSDE1O75534 798 aaKnown RBP9.53□□□□□ -0.88
USP28-215ENST00000545608 DEXIO95424 95 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 DARSP14868 501 aaKnown RBP9.53□□□□□ -0.88
USP28-215ENST00000545608 LAG3P18627 525 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 PBX3P40426 434 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 PRSS12P56730 875 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 PLCB3Q01970 1234 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 TBC1D8BQ0IIM8 1120 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 STK3Q13188 491 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 DUSP6Q16828 381 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 DAGLBQ8NCG7 672 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 SMRP1Q8NCR6 262 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 MRPS27Q92552 414 aaKnown RBP9.53□□□□□ -0.88
USP28-215ENST00000545608 MBOAT7Q96N66 472 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 NIFKQ9BYG3 293 aaKnown RBP9.53□□□□□ -0.88
USP28-215ENST00000545608 ADAM33Q9BZ11 813 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 C22orf23Q9BZE7 217 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 TM6SF1Q9BZW5 370 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 KCNJ14Q9UNX9 436 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 USP15Q9Y4E8 981 aaPredicted RBP9.53□□□□□ -0.88
USP28-215ENST00000545608 CYP46A1Q9Y6A2 500 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 EVPLQ92817 2033 aa9.53□□□□□ -0.88
USP28-215ENST00000545608 IGKV6-21A0A0C4DH24 114 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 A0A0U1RQF3 1178 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 HOXA2O43364 376 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 ATF7P17544 494 aaPredicted RBP9.52□□□□□ -0.89
USP28-215ENST00000545608 KCNC3Q14003 757 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 CSPP1Q1MSJ5 1256 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 INF2Q27J81 1249 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 MTERF2Q49AM1 385 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 XKR3Q5GH77 459 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 HERC4Q5GLZ8 1057 aaPredicted RBP9.52□□□□□ -0.89
USP28-215ENST00000545608 CLLU1OSQ5K130 101 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 PLPP4Q5VZY2 271 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 KCNT2Q6UVM3 1135 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 ZNF598Q86UK7 904 aaKnown RBP9.52□□□□□ -0.89
USP28-215ENST00000545608 ZNF710Q8N1W2 664 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 RNF169Q8NCN4 708 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 RDM1Q8NG50 284 aa9.52□□□□□ -0.89
USP28-215ENST00000545608 ETNPPLQ8TBG4 499 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms