RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 IFNLR1Q8IU57 520 aaPredicted RBP12.73□□□□□ -0.37
YBX3-216ENST00000544622 TMEM192Q8IY95 271 aa12.73□□□□□ -0.37
YBX3-216ENST00000544622 CMTR2Q8IYT2 770 aaKnown RBP12.73□□□□□ -0.37
YBX3-216ENST00000544622 ERMNQ8TAM6 284 aa12.73□□□□□ -0.37
YBX3-216ENST00000544622 MMTAG2Q9BU76 263 aaKnown RBP12.73□□□□□ -0.37
YBX3-216ENST00000544622 NFKBIZQ9BYH8 718 aa12.73□□□□□ -0.37
YBX3-216ENST00000544622 MINDY3Q9H8M7 445 aa12.73□□□□□ -0.37
YBX3-216ENST00000544622 MTUS1Q9ULD2 1270 aa12.73□□□□□ -0.37
YBX3-216ENST00000544622 PCDHB7Q9Y5E2 793 aa12.73□□□□□ -0.37
YBX3-216ENST00000544622 PRRC2BQ5JSZ5 2229 aaKnown RBP12.73□□□□□ -0.37
YBX3-216ENST00000544622 RB1P06400 928 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 ZSCAN20P17040 1043 aaPredicted RBP12.72□□□□□ -0.37
YBX3-216ENST00000544622 ATF7P17544 494 aaPredicted RBP12.72□□□□□ -0.37
YBX3-216ENST00000544622 SYT1P21579 422 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 HOXA11P31270 313 aaPredicted RBP12.72□□□□□ -0.37
YBX3-216ENST00000544622 PTENP60484 403 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 BTG3Q14201 252 aaPredicted RBP12.72□□□□□ -0.37
YBX3-216ENST00000544622 MXD4Q14582 209 aaPredicted RBP12.72□□□□□ -0.37
YBX3-216ENST00000544622 ARL6IP4Q66PJ3 421 aaKnown RBP12.72□□□□□ -0.37
YBX3-216ENST00000544622 HAUS3Q68CZ6 603 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 POTEGQ6S5H5 508 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 DTHD1Q6ZMT9 781 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 BRAPQ7Z569 592 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 SRGAP1Q7Z6B7 1085 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 SLC17A8Q8NDX2 589 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 GDPD5Q8WTR4 605 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 NLRP4Q96MN2 994 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 ATP6V0A4Q9HBG4 840 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 BMP2KQ9NSY1 1161 aaPredicted RBP12.72□□□□□ -0.37
YBX3-216ENST00000544622 RNF19AQ9NV58 838 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 RNF216Q9NWF9 866 aaPredicted RBP12.72□□□□□ -0.37
YBX3-216ENST00000544622 STK24Q9Y6E0 443 aa12.72□□□□□ -0.37
YBX3-216ENST00000544622 ZNF623O75123 536 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 EOMESO95936 686 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 SRGAP2CP0DJJ0 459 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 PDCP20941 246 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 SFPQP23246 707 aaKnown RBP eCLIP12.71□□□□□ -0.37
YBX3-216ENST00000544622 GLRA2P23416 452 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 CDC25AP30304 524 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 GATMP50440 423 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 PCBP1Q15365 356 aaKnown RBP eCLIP12.71□□□□□ -0.37
YBX3-216ENST00000544622 HYIQ5T013 277 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 ECHDC2Q86YB7 292 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.71□□□□□ -0.37
YBX3-216ENST00000544622 RNF149Q8NC42 400 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 FBXO22Q8NEZ5 403 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 ASAP3Q8TDY4 903 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 P2RX5Q93086 422 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 CASD1Q96PB1 797 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 PLVAPQ9BX97 442 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 RAB34Q9BZG1 259 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 AGPAT5Q9NUQ2 364 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 DACT1Q9NYF0 836 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 RWDD3Q9Y3V2 267 aa12.71□□□□□ -0.37
YBX3-216ENST00000544622 MRPL42Q9Y6G3 142 aaKnown RBP12.71□□□□□ -0.37
YBX3-216ENST00000544622 ARID2Q68CP9 1835 aa12.71□□□□□ -0.38
YBX3-216ENST00000544622 PP2D1A8MPX8 630 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 GTPBP6O43824 516 aaPredicted RBP12.7□□□□□ -0.38
YBX3-216ENST00000544622 FGFR1P11362 822 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 CYP11B2P19099 503 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 PHKA2P46019 1235 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 CAPSQ13938 189 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 CAMK1Q14012 370 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 CCDC85BQ15834 202 aaPredicted RBP12.7□□□□□ -0.38
YBX3-216ENST00000544622 AMHR2Q16671 573 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 NAALADL2Q58DX5 795 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 KCTD17Q8N5Z5 321 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 MCPH1Q8NEM0 835 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 SCLT1Q96NL6 688 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 CWH43Q9H720 699 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 LRFN2Q9ULH4 789 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 KIAA1024Q9UPX6 916 aa12.7□□□□□ -0.38
YBX3-216ENST00000544622 USO1O60763 962 aaKnown RBP12.69□□□□□ -0.38
YBX3-216ENST00000544622 CCT6AP40227 531 aaKnown RBP12.69□□□□□ -0.38
YBX3-216ENST00000544622 MBTD1Q05BQ5 628 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 RESTQ13127 1097 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 GPM6BQ13491 265 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 CLLU1OSQ5K130 101 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 UBXN11Q5T124 520 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 KRT79Q5XKE5 535 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 PADI6Q6TGC4 694 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 LRRC55Q6ZSA7 311 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 CATSPER4Q7RTX7 472 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 SNX29Q8TEQ0 813 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 MRPL38Q96DV4 380 aaKnown RBP12.69□□□□□ -0.38
YBX3-216ENST00000544622 TMEM117Q9H0C3 514 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 BHMT2Q9H2M3 363 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 GPRC5CQ9NQ84 441 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 PRDM6Q9NQX0 595 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 FAM105AQ9NUU6 356 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 DDX19AQ9NUU7 478 aaKnown RBP12.69□□□□□ -0.38
YBX3-216ENST00000544622 TYW1Q9NV66 732 aaKnown RBP12.69□□□□□ -0.38
YBX3-216ENST00000544622 PLAGL2Q9UPG8 496 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 MTMR6Q9Y217 621 aa12.69□□□□□ -0.38
YBX3-216ENST00000544622 COL4A4P53420 1690 aaPredicted RBP12.69□□□□□ -0.38
YBX3-216ENST00000544622 RALGAPA2Q2PPJ7 1873 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 FNDC1Q4ZHG4 1894 aaPredicted RBP12.68□□□□□ -0.38
YBX3-216ENST00000544622 TBKBP1A7MCY6 615 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 E9PMD0 336 aa12.68□□□□□ -0.38
YBX3-216ENST00000544622 GRM6O15303 877 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms