RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 PRPHP41219 470 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 LAMTOR4Q0VGL1 99 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 BTG3Q14201 252 aaPredicted RBP15.83■□□□□ 0.12
USP28-209ENST00000540925 RILPL1Q5EBL4 403 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 IFNLR1Q8IU57 520 aaPredicted RBP15.83■□□□□ 0.12
USP28-209ENST00000540925 PIGOQ8TEQ8 1089 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 TCP11Q8WWU5 503 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 PSPC1Q8WXF1 523 aaKnown RBP15.83■□□□□ 0.12
USP28-209ENST00000540925 MINDY3Q9H8M7 445 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 CHST12Q9NRB3 414 aa15.83■□□□□ 0.12
USP28-209ENST00000540925 A0A087WWV3 80 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 A0A0U1RQF3 1178 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 ASAP2O43150 1006 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 ATP2C1P98194 919 aaPredicted RBP15.82■□□□□ 0.12
USP28-209ENST00000540925 POU5F1BQ06416 359 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 CCDC85BQ15834 202 aaPredicted RBP15.82■□□□□ 0.12
USP28-209ENST00000540925 ECM1Q16610 540 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 FAM102BQ5T8I3 360 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 POTEGQ6S5H5 508 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 ECHDC2Q86YB7 292 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 NLRP4Q96MN2 994 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 SCLT1Q96NL6 688 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 MTRQ99707 1265 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 PLVAPQ9BX97 442 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 INO80BQ9C086 356 aaPredicted RBP15.82■□□□□ 0.12
USP28-209ENST00000540925 BMP2KQ9NSY1 1161 aaPredicted RBP15.82■□□□□ 0.12
USP28-209ENST00000540925 RNF216Q9NWF9 866 aaPredicted RBP15.82■□□□□ 0.12
USP28-209ENST00000540925 RWDD3Q9Y3V2 267 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 PCDHB7Q9Y5E2 793 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 ATG2AQ2TAZ0 1938 aa15.82■□□□□ 0.12
USP28-209ENST00000540925 H3BQV1 296 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 SFPQP23246 707 aaKnown RBP eCLIP15.81■□□□□ 0.12
USP28-209ENST00000540925 HOXA11P31270 313 aaPredicted RBP15.81■□□□□ 0.12
USP28-209ENST00000540925 PTENP60484 403 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 LARP1BQ659C4 914 aaKnown RBP15.81■□□□□ 0.12
USP28-209ENST00000540925 MCTP1Q6DN14 999 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 SRGAP1Q7Z6B7 1085 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 ERMNQ8TAM6 284 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 ASAP3Q8TDY4 903 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 PPM1EQ8WY54 764 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 P2RX5Q93086 422 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 MRPL38Q96DV4 380 aaKnown RBP15.81■□□□□ 0.12
USP28-209ENST00000540925 INTS4Q96HW7 963 aaKnown RBP15.81■□□□□ 0.12
USP28-209ENST00000540925 CASD1Q96PB1 797 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 NACC1Q96RE7 527 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 NFKBIZQ9BYH8 718 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 ATP6V0A4Q9HBG4 840 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 LRWD1Q9UFC0 647 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 LRFN2Q9ULH4 789 aa15.81■□□□□ 0.12
USP28-209ENST00000540925 EOMESO95936 686 aa15.8■□□□□ 0.12
USP28-209ENST00000540925 FGFR1P11362 822 aa15.8■□□□□ 0.12
USP28-209ENST00000540925 ZSCAN20P17040 1043 aaPredicted RBP15.8■□□□□ 0.12
USP28-209ENST00000540925 CTNNB1P35222 781 aa15.8■□□□□ 0.12
USP28-209ENST00000540925 GPM6BQ13491 265 aa15.8■□□□□ 0.12
USP28-209ENST00000540925 MXD4Q14582 209 aaPredicted RBP15.8■□□□□ 0.12
USP28-209ENST00000540925 PAN2Q504Q3 1202 aaKnown RBP15.8■□□□□ 0.12
USP28-209ENST00000540925 CLLU1OSQ5K130 101 aa15.8■□□□□ 0.12
USP28-209ENST00000540925 HAUS3Q68CZ6 603 aa15.8■□□□□ 0.12
USP28-209ENST00000540925 RNF149Q8NC42 400 aa15.8■□□□□ 0.12
USP28-209ENST00000540925 MMTAG2Q9BU76 263 aaKnown RBP15.8■□□□□ 0.12
USP28-209ENST00000540925 C11orf84Q9BUA3 381 aaPredicted RBP15.8■□□□□ 0.12
USP28-209ENST00000540925 AGPAT5Q9NUQ2 364 aa15.8■□□□□ 0.12
USP28-209ENST00000540925 DACT1Q9NYF0 836 aa15.8■□□□□ 0.12
USP28-209ENST00000540925 GRM6O15303 877 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 ZNF623O75123 536 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 SRGAP2CP0DJJ0 459 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 GLRA2P23416 452 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 PHKA2P46019 1235 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 CAPSQ13938 189 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 CAMK1Q14012 370 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 COL19A1Q14993 1142 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 NAALADL2Q58DX5 795 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 LRRC55Q6ZSA7 311 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 MICALL1Q8N3F8 863 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 SNX21Q969T3 373 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 TMEM117Q9H0C3 514 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 CWH43Q9H720 699 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 HCSTQ9UBK5 93 aa15.79■□□□□ 0.12
USP28-209ENST00000540925 TBKBP1A7MCY6 615 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 PP2D1A8MPX8 630 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 K7ELQ4 463 aaPredicted RBP15.78■□□□□ 0.12
USP28-209ENST00000540925 HOXA2O43364 376 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 USO1O60763 962 aaKnown RBP15.78■□□□□ 0.12
USP28-209ENST00000540925 CCT6AP40227 531 aaKnown RBP15.78■□□□□ 0.12
USP28-209ENST00000540925 MBTD1Q05BQ5 628 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 PCBP1Q15365 356 aaKnown RBP eCLIP15.78■□□□□ 0.12
USP28-209ENST00000540925 AMHR2Q16671 573 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 HYIQ5T013 277 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 UBXN11Q5T124 520 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 ARL6IP4Q66PJ3 421 aaKnown RBP15.78■□□□□ 0.12
USP28-209ENST00000540925 CATSPER4Q7RTX7 472 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 BRAPQ7Z569 592 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 MCPH1Q8NEM0 835 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 ATXN2LQ8WWM7 1075 aaKnown RBP15.78■□□□□ 0.12
USP28-209ENST00000540925 LMAN2LQ9H0V9 348 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 GPRC5CQ9NQ84 441 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 THEGQ9P2T0 379 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 PLAGL2Q9UPG8 496 aa15.78■□□□□ 0.12
USP28-209ENST00000540925 PIN4Q9Y237 131 aaKnown RBP15.78■□□□□ 0.12
USP28-209ENST00000540925 STK24Q9Y6E0 443 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms