RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CCDC152Q4G0S7 254 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 LMBRD2Q68DH5 695 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-214ENST00000540539 Q6ZNX1 250 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 LRRC74BQ6ZQY2 392 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 CEP70Q8NHQ1 597 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 TBC1D16Q8TBP0 767 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 GPATCH3Q96I76 525 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 GPR101Q96P66 508 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-214ENST00000540539 HEPHQ9BQS7 1158 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 STK33Q9BYT3 514 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 VPS16Q9H269 839 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 AASDHPPTQ9NRN7 309 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 DDX18Q9NVP1 670 aaKnown RBP10.18□□□□□ -0.78
CLIP1-214ENST00000540539 SEC63Q9UGP8 760 aaKnown RBP10.18□□□□□ -0.78
CLIP1-214ENST00000540539 GIT1Q9Y2X7 761 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 ARL2BPQ9Y2Y0 163 aa10.18□□□□□ -0.78
CLIP1-214ENST00000540539 PALLDQ8WX93 1383 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 H7C1D1 291 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 MATN2O00339 956 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 STK25O00506 426 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 RAD51CO43502 376 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 PPP6R2O75170 966 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 MOCS3O95396 460 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 ENPP1P22413 925 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 TKTP29401 623 aaKnown RBP10.17□□□□□ -0.78
CLIP1-214ENST00000540539 GTF2H1P32780 548 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 GRIA2P42262 883 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 VWA3BQ502W6 1294 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 NEK10Q6ZWH5 1172 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 PPP1R42Q7Z4L9 355 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 ANKRD13BQ86YJ7 626 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 LRRC49Q8IUZ0 686 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 TTC39CQ8N584 583 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.17□□□□□ -0.78
CLIP1-214ENST00000540539 SLC4A9Q96Q91 983 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 ZNF184Q99676 751 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-214ENST00000540539 TIMMDC1Q9NPL8 285 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 ECHDC1Q9NTX5 307 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 GINM1Q9NU53 330 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 TXLNGQ9NUQ3 528 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 DDX43Q9NXZ2 648 aaKnown RBP10.17□□□□□ -0.78
CLIP1-214ENST00000540539 TRIM17Q9Y577 477 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 WNT7AO00755 349 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 FBXO21O94952 628 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 LMNAP02545 664 aaKnown RBP10.17□□□□□ -0.78
CLIP1-214ENST00000540539 CYP2C9P11712 490 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 LMNB1P20700 586 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 CYLC1P35663 651 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-214ENST00000540539 IARSP41252 1262 aaKnown RBP10.17□□□□□ -0.78
CLIP1-214ENST00000540539 SPIDRQ14159 915 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 PTPAQ15257 358 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 GPR162Q16538 588 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 CFAP221Q4G0U5 840 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 KHDC1Q4VXA5 237 aaKnown RBP10.17□□□□□ -0.78
CLIP1-214ENST00000540539 PATL1Q86TB9 770 aaKnown RBP10.17□□□□□ -0.78
CLIP1-214ENST00000540539 SATL1Q86VE3 508 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 ZBED8Q8IZ13 594 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 ST13P4Q8IZP2 240 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-214ENST00000540539 ISCUQ9H1K1 167 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 NEUROG2Q9H2A3 272 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 TAB2Q9NYJ8 693 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 GPC6Q9Y625 555 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-214ENST00000540539 LAMB4A4D0S4 1761 aa10.17□□□□□ -0.78
CLIP1-214ENST00000540539 LOC102724428A0A0B4J2F2 783 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 SMIM31A0A1B0GVY4 71 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 CCDC162PA2VCL2 907 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 MYBP10242 640 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 EPHB2P29323 1055 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 ACADVLP49748 655 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 SIK1P57059 783 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 PFKPQ01813 784 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 MGAT5Q09328 741 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 USPL1Q5W0Q7 1092 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 SIX5Q8N196 739 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 NUP93Q8N1F7 819 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 STARD8Q92502 1023 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 TBC1D10AQ9BXI6 508 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 TLR10Q9BXR5 811 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 CEP44Q9C0F1 390 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 HOXC10Q9NYD6 342 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 LRWD1Q9UFC0 647 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 E9PBE3 544 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 HIP1O00291 1037 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 ADCY3O60266 1144 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 TAF5LO75529 589 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 COPB1P53618 953 aaKnown RBP10.16□□□□□ -0.78
CLIP1-214ENST00000540539 CSE1LP55060 971 aaKnown RBP10.16□□□□□ -0.78
CLIP1-214ENST00000540539 NAA20P61599 178 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 MTMR3Q13615 1198 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 ARHGEF6Q15052 776 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 ADRM1Q16186 407 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 MEA1Q16626 185 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 B3GNT6Q6ZMB0 384 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 HS2ST1Q7LGA3 356 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 DDX42Q86XP3 938 aaKnown RBP eCLIP10.16□□□□□ -0.78
CLIP1-214ENST00000540539 DNAJC10Q8IXB1 793 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 FAM186BQ8IYM0 893 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 BBS5Q8N3I7 341 aa10.16□□□□□ -0.78
CLIP1-214ENST00000540539 EIF1ADQ8N9N8 165 aaKnown RBP10.16□□□□□ -0.78
CLIP1-214ENST00000540539 CFAP61Q8NHU2 1237 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms