RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 EOMESO95936 686 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 SKIP12755 728 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 XRCC6P12956 609 aaKnown RBP eCLIP12.9□□□□□ -0.34
RTN3-209ENST00000538995 GATMP50440 423 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 COL19A1Q14993 1142 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 PCBP1Q15365 356 aaKnown RBP eCLIP12.9□□□□□ -0.341e-11■■■□□ 14.6
RTN3-209ENST00000538995 TTC38Q5R3I4 469 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 SRGAP1Q7Z6B7 1085 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 ECHDC2Q86YB7 292 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 ZNF579Q8NAF0 562 aaKnown RBP12.9□□□□□ -0.34
RTN3-209ENST00000538995 PRPF31Q8WWY3 499 aaKnown RBP12.9□□□□□ -0.34
RTN3-209ENST00000538995 TMX3Q96JJ7 454 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 ZNF668Q96K58 619 aaPredicted RBP12.9□□□□□ -0.34
RTN3-209ENST00000538995 NLRP4Q96MN2 994 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 MTRQ99707 1265 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 UBE2ZQ9H832 354 aaPredicted RBP12.9□□□□□ -0.34
RTN3-209ENST00000538995 TUFT1Q9NNX1 390 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 PLAGL2Q9UPG8 496 aa12.9□□□□□ -0.34
RTN3-209ENST00000538995 LOXHD1Q8IVV2 1947 aa12.9□□□□□ -0.35
RTN3-209ENST00000538995 NLRC5Q86WI3 1866 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 NCOR1O75376 2440 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 MUC3AQ02505 3323 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 POTEMA6NI47 508 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 GRM6O15303 877 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 NCK2O43639 380 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 FGFR1P11362 822 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 LAG3P18627 525 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 ATP2B1P20020 1258 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 MUTP22033 750 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 RARRES1P49788 294 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 RAB27AP51159 221 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 TFF2Q03403 129 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 UBE3AQ05086 875 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 LAMTOR4Q0VGL1 99 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 MXD4Q14582 209 aaPredicted RBP12.89□□□□□ -0.35
RTN3-209ENST00000538995 FAM102BQ5T8I3 360 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 CATSPER4Q7RTX7 472 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 ZNF598Q86UK7 904 aaKnown RBP12.89□□□□□ -0.35
RTN3-209ENST00000538995 ABI1Q8IZP0 508 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 LRRC43Q8N309 656 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 ERMNQ8TAM6 284 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 ADAMTS19Q8TE59 1207 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 TMEM143Q96AN5 459 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 CCDC43Q96MW1 224 aaKnown RBP12.89□□□□□ -0.35
RTN3-209ENST00000538995 POLR3CQ9BUI4 534 aaPredicted RBP12.89□□□□□ -0.35
RTN3-209ENST00000538995 IFT122Q9HBG6 1241 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 PCDHB12Q9Y5F1 795 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 BRWD1Q9NSI6 2320 aa12.89□□□□□ -0.35
RTN3-209ENST00000538995 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.88□□□□□ -0.35
RTN3-209ENST00000538995 CARNS1A5YM72 827 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 CSDE1O75534 798 aaKnown RBP12.88□□□□□ -0.35
RTN3-209ENST00000538995 ITGB1P05556 798 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 BMP1P13497 986 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 IBSPP21815 317 aaPredicted RBP12.88□□□□□ -0.35
RTN3-209ENST00000538995 FGFR4P22455 802 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 PHKA2P46019 1235 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 FXR2P51116 673 aaKnown RBP eCLIP12.88□□□□□ -0.35
RTN3-209ENST00000538995 POU5F1BQ06416 359 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 ZNF174Q15697 407 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 TCEAL5Q5H9L2 206 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 HAUS3Q68CZ6 603 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 FERMT3Q86UX7 667 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 IFNLR1Q8IU57 520 aaPredicted RBP12.88□□□□□ -0.35
RTN3-209ENST00000538995 KSR1Q8IVT5 923 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 KLHL23Q8NBE8 558 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 PPP2R3CQ969Q6 453 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 CASD1Q96PB1 797 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 MRPL9Q9BYD2 267 aaKnown RBP12.88□□□□□ -0.35
RTN3-209ENST00000538995 XPNPEP1Q9NQW7 623 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 AGPAT5Q9NUQ2 364 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 RNF19AQ9NV58 838 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 PIN4Q9Y237 131 aaKnown RBP12.88□□□□□ -0.35
RTN3-209ENST00000538995 STK24Q9Y6E0 443 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 BDP1A6H8Y1 2624 aa12.88□□□□□ -0.35
RTN3-209ENST00000538995 LAD1O00515 517 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 ZBTB39O15060 712 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 ZNF623O75123 536 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 CD2BP2O95400 341 aaKnown RBP12.87□□□□□ -0.35
RTN3-209ENST00000538995 SPATA31C1P0DKV0 1188 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 ATF7P17544 494 aaPredicted RBP12.87□□□□□ -0.35
RTN3-209ENST00000538995 RPA1P27694 616 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 PPM1AP35813 382 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 TFDP1Q14186 410 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 LEXMQ3ZCV2 418 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 SPOUT1Q5T280 376 aaKnown RBP12.87□□□□□ -0.35
RTN3-209ENST00000538995 TWF2Q6IBS0 349 aaKnown RBP12.87□□□□□ -0.35
RTN3-209ENST00000538995 CATSPER3Q86XQ3 398 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 COLGALT1Q8NBJ5 622 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 RNF149Q8NC42 400 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 SPPL3Q8TCT6 385 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 PABPC5Q96DU9 382 aaKnown RBP12.87□□□□□ -0.35
RTN3-209ENST00000538995 NACC1Q96RE7 527 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 UHRF1Q96T88 793 aaPredicted RBP12.87□□□□□ -0.35
RTN3-209ENST00000538995 NFKBIZQ9BYH8 718 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 RAB34Q9BZG1 259 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 CWH43Q9H720 699 aa12.87□□□□□ -0.35
RTN3-209ENST00000538995 ALG13Q9NP73 1137 aaKnown RBP12.87□□□□□ -0.35
RTN3-209ENST00000538995 TYW1Q9NV66 732 aaKnown RBP12.87□□□□□ -0.35
RTN3-209ENST00000538995 DBR1Q9UK59 544 aaKnown RBP12.87□□□□□ -0.35
RTN3-209ENST00000538995 LZTS1Q9Y250 596 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms