RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 AMACRQ9UHK6 382 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 MYPNQ86TC9 1320 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 FLT4P35916 1363 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 KIDINS220Q9ULH0 1771 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 TMEM120BA0PK00 339 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 A6NJR5 290 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 NDC80O14777 642 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 FGAP02671 866 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 SERPING1P05155 500 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 PDGFRBP09619 1106 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 XBP1P17861 261 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 HALP42357 657 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 RNASE9P60153 205 aaKnown RBP13.35□□□□□ -0.27
USP3-203ENST00000538686 GFPT1Q06210 699 aaPredicted RBP13.35□□□□□ -0.27
USP3-203ENST00000538686 NEXNQ0ZGT2 675 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 KCNMA1Q12791 1236 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 GRM2Q14416 872 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 MIIPQ5JXC2 388 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 CHADLQ6NUI6 762 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 PDXDC1Q6P996 788 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 C16orf87Q6PH81 154 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 PPP1R21Q6ZMI0 780 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 FAM186BQ8IYM0 893 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 GAB3Q8WWW8 586 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 VPS50Q96JG6 964 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 ZDHHC18Q9NUE0 388 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 RASAL2Q9UJF2 1139 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 SIK3Q9Y2K2 1263 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 ZNF711Q9Y462 761 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 NDUFB9Q9Y6M9 179 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 CCDC61Q9Y6R9 512 aa13.35□□□□□ -0.27
USP3-203ENST00000538686 KDM3BQ7LBC6 1761 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 A2ML1A8K2U0 1454 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 LRRC53A6NM62 1247 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 DDX3XO00571 662 aaKnown RBP eCLIP13.34□□□□□ -0.27
USP3-203ENST00000538686 TTI1O43156 1089 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 ZPR1O75312 459 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 GNAT2P19087 354 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 STX2P32856 288 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 HAND2P61296 217 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 PLCB3Q01970 1234 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 ITGA7Q13683 1181 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 AUHQ13825 339 aaKnown RBP13.34□□□□□ -0.27
USP3-203ENST00000538686 RRAGAQ7L523 313 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 ARHGAP24Q8N264 748 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.34□□□□□ -0.27
USP3-203ENST00000538686 ARHGEF2Q92974 986 aaKnown RBP13.34□□□□□ -0.27
USP3-203ENST00000538686 DYDC2Q96IM9 177 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 SERPINB12Q96P63 405 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 PITPNM3Q9BZ71 974 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 TMEM60Q9H2L4 133 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 LRRC4CQ9HCJ2 640 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 CABP5Q9NP86 173 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 SCHIP1Q9P0W5 487 aaPredicted RBP13.34□□□□□ -0.27
USP3-203ENST00000538686 THEGQ9P2T0 379 aa13.34□□□□□ -0.27
USP3-203ENST00000538686 TTC7AQ9ULT0 858 aaPredicted RBP13.34□□□□□ -0.27
USP3-203ENST00000538686 E9PBE3 544 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 CCDC22O60826 627 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 TBX10O75333 385 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 CDK4P11802 303 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 ITGA6P23229 1130 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 CCNE1P24864 410 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 CRABP2P29373 138 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 LIFRP42702 1097 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 EMP3P54852 163 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 DHX34Q14147 1143 aaKnown RBP13.33□□□□□ -0.27
USP3-203ENST00000538686 SLC29A2Q14542 456 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 TDRD12Q587J7 1177 aaKnown RBP13.33□□□□□ -0.27
USP3-203ENST00000538686 DUPD1Q68J44 220 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 PATL1Q86TB9 770 aaKnown RBP13.33□□□□□ -0.27
USP3-203ENST00000538686 DZIP1Q86YF9 867 aaKnown RBP13.33□□□□□ -0.27
USP3-203ENST00000538686 EXOC8Q8IYI6 725 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 BBS5Q8N3I7 341 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 GIMAP8Q8ND71 665 aaPredicted RBP13.33□□□□□ -0.27
USP3-203ENST00000538686 CASP10Q92851 521 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 ATP6V0A1Q93050 837 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 DDX50Q9BQ39 737 aaKnown RBP13.33□□□□□ -0.27
USP3-203ENST00000538686 GPR108Q9NPR9 543 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 KRT82Q9NSB4 513 aa13.33□□□□□ -0.27
USP3-203ENST00000538686 DIS3Q9Y2L1 958 aaKnown RBP13.33□□□□□ -0.27
USP3-203ENST00000538686 ATP8B3O60423 1300 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 SIGLEC1Q9BZZ2 1709 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 MYH6P13533 1939 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 OPHN1O60890 802 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 RHOBTB3O94955 611 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 PYGMP11217 842 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 VDRP11473 427 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 KLRC1P26715 233 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 CWF19L2Q2TBE0 894 aaKnown RBP13.33□□□□□ -0.28
USP3-203ENST00000538686 SYCP2LQ5T4T6 812 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 P2RX5Q93086 422 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 NMD3Q96D46 503 aaKnown RBP13.33□□□□□ -0.28
USP3-203ENST00000538686 ECSITQ9BQ95 431 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 ERP44Q9BS26 406 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 FAM217BQ9NTX9 383 aaPredicted RBP13.33□□□□□ -0.28
USP3-203ENST00000538686 NKIRAS1Q9NYS0 192 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 CHKBQ9Y259 395 aa13.33□□□□□ -0.28
USP3-203ENST00000538686 FAM32AQ9Y421 112 aaKnown RBP13.33□□□□□ -0.28
USP3-203ENST00000538686 ARHGAP10A1A4S6 786 aa13.32□□□□□ -0.28
USP3-203ENST00000538686 F8W8V4 182 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms