RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 HELQQ8TDG4 1101 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 SUSD6Q92537 303 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 ZNF558Q96NG5 402 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 CDCA3Q99618 268 aaPredicted RBP9.51□□□□□ -0.89
USP28-203ENST00000537490 TCF25Q9BQ70 676 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 FDXACB1Q9BRP7 624 aaPredicted RBP9.51□□□□□ -0.89
USP28-203ENST00000537490 GCOM2Q9BZD3 368 aaPredicted RBP9.51□□□□□ -0.89
USP28-203ENST00000537490 S1PR5Q9H228 398 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 GJB4Q9NTQ9 266 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 DDX25Q9UHL0 483 aaKnown RBP9.51□□□□□ -0.89
USP28-203ENST00000537490 PUF60Q9UHX1 559 aaKnown RBP9.51□□□□□ -0.89
USP28-203ENST00000537490 KIAA1671Q9BY89 1806 aa9.51□□□□□ -0.89
USP28-203ENST00000537490 NT5C1B-RDH14C9J2C7 533 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 MAFO75444 373 aaPredicted RBP9.5□□□□□ -0.89
USP28-203ENST00000537490 TECP42680 631 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 NPEPPSP55786 919 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 PSMC5P62195 406 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 KRT17Q04695 432 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 CBX2Q14781 532 aaPredicted RBP9.5□□□□□ -0.89
USP28-203ENST00000537490 LETM2Q2VYF4 491 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 LONRF3Q496Y0 759 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 PLA2G4FQ68DD2 849 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 ANKRD54Q6NXT1 300 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 LLGL2Q6P1M3 1020 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 SYCE2Q6PIF2 218 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 TMEM184AQ6ZMB5 413 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 ANO5Q75V66 913 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 KRT25Q7Z3Z0 450 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 RHPN2Q8IUC4 686 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 ZNF579Q8NAF0 562 aaKnown RBP9.5□□□□□ -0.89
USP28-203ENST00000537490 EDAQ92838 391 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 RPGRIP1Q96KN7 1286 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 PHF20Q9BVI0 1012 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 APOL5Q9BWW9 433 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 PHF7Q9BWX1 381 aaPredicted RBP9.5□□□□□ -0.89
USP28-203ENST00000537490 KCNMB3Q9NPA1 279 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 NGRNQ9NPE2 291 aaKnown RBP9.5□□□□□ -0.89
USP28-203ENST00000537490 ENTPD7Q9NQZ7 604 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 CHST12Q9NRB3 414 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 DACT1Q9NYF0 836 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 SPG21Q9NZD8 308 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 SUCLA2Q9P2R7 463 aaPredicted RBP9.5□□□□□ -0.89
USP28-203ENST00000537490 WRAP73Q9P2S5 460 aaPredicted RBP9.5□□□□□ -0.89
USP28-203ENST00000537490 VAV3Q9UKW4 847 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 TPCN1Q9ULQ1 816 aa9.5□□□□□ -0.89
USP28-203ENST00000537490 FNDC1Q4ZHG4 1894 aaPredicted RBP9.5□□□□□ -0.89
USP28-203ENST00000537490 MYH9P35579 1960 aaKnown RBP9.5□□□□□ -0.89
USP28-203ENST00000537490 PLXNA4Q9HCM2 1894 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 MEIS3P2A8K0S8 358 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 CTDNEP1O95476 244 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 PPM1AP35813 382 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 PHKA2P46019 1235 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 DNM2P50570 870 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 CDC42EP1Q00587 391 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 PPP2R5CQ13362 524 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 EARS2Q5JPH6 523 aaKnown RBP9.49□□□□□ -0.89
USP28-203ENST00000537490 TMC7Q7Z402 723 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 ZNF410Q86VK4 478 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 FAM177A1Q8N128 213 aaPredicted RBP9.49□□□□□ -0.89
USP28-203ENST00000537490 MRPL43Q8N983 215 aaKnown RBP9.49□□□□□ -0.89
USP28-203ENST00000537490 OXER1Q8TDS5 423 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 HAS1Q92839 578 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 LPPQ93052 612 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 FBXL18Q96ME1 805 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 NLRP4Q96MN2 994 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 TRAIPQ9BWF2 469 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 SLKQ9H2G2 1235 aaPredicted RBP9.49□□□□□ -0.89
USP28-203ENST00000537490 CYP26B1Q9NR63 512 aa9.49□□□□□ -0.89
USP28-203ENST00000537490 CCDC194A0A1B0GVG4 234 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 FSD2A1L4K1 749 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 C2orf71A6NGG8 1288 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 PFKFB2O60825 505 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 P4HBP07237 508 aaKnown RBP9.48□□□□□ -0.89
USP28-203ENST00000537490 SFPQP23246 707 aaKnown RBP eCLIP9.48□□□□□ -0.89
USP28-203ENST00000537490 QARSP47897 775 aaKnown RBP9.48□□□□□ -0.89
USP28-203ENST00000537490 BCAR1P56945 870 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 ZXDAP98168 799 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 EPHA7Q15375 998 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 TWF2Q6IBS0 349 aaKnown RBP9.48□□□□□ -0.89
USP28-203ENST00000537490 PPP4R3AQ6IN85 833 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 TRIM67Q6ZTA4 783 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 PIK3AP1Q6ZUJ8 805 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 CATSPER4Q7RTX7 472 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 NEK8Q86SG6 692 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 ALYREFQ86V81 257 aaKnown RBP9.48□□□□□ -0.89
USP28-203ENST00000537490 TMEM173Q86WV6 379 aaPredicted RBP9.48□□□□□ -0.89
USP28-203ENST00000537490 FAM20AQ96MK3 541 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 MRPL9Q9BYD2 267 aaKnown RBP9.48□□□□□ -0.89
USP28-203ENST00000537490 INO80BQ9C086 356 aaPredicted RBP9.48□□□□□ -0.89
USP28-203ENST00000537490 NRDE2Q9H7Z3 1164 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 IFT122Q9HBG6 1241 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 FAM105AQ9NUU6 356 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 RGL1Q9NZL6 768 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 CDH22Q9UJ99 828 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 PIN4Q9Y237 131 aaKnown RBP9.48□□□□□ -0.89
USP28-203ENST00000537490 HCFC2Q9Y5Z7 792 aa9.48□□□□□ -0.89
USP28-203ENST00000537490 MUC6Q6W4X9 2439 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 TECTAO75443 2155 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 FAM205CA6NFA0 338 aa9.47□□□□□ -0.89
USP28-203ENST00000537490 TMEM221A6NGB7 291 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms