RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 COPS2P61201 443 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 ADCK5Q3MIX3 580 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 RNF219Q5W0B1 726 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-209ENST00000537178 SZRD1Q7Z422 152 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 CEP170BQ9Y4F5 1589 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-209ENST00000537178 ARHGAP10A1A4S6 786 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 HAUS5O94927 633 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 HLA-DPA1P20036 260 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 PCYT1AP49585 367 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 DAB2P98082 770 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 SLC7A5Q01650 507 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 IMPG1Q17R60 797 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 C1orf146Q5VVC0 180 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 TTC23LQ6PF05 361 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 ANO5Q75V66 913 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 GRAMD1CQ8IYS0 662 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 OR6B3Q8NGW1 331 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 SAAL1Q96ER3 474 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 ZWILCHQ9H900 591 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 DNAJC17Q9NVM6 304 aaKnown RBP11.35□□□□□ -0.59
CLIP1-209ENST00000537178 PLAAQ9Y263 795 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 SRGAP2CP0DJJ0 459 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 SMARCA1P28370 1054 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 HABP4Q5JVS0 413 aaKnown RBP11.35□□□□□ -0.59
CLIP1-209ENST00000537178 MTRQ99707 1265 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 KIAA1586Q9HCI6 787 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 GTSE1Q9NYZ3 720 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 STX18Q9P2W9 335 aaKnown RBP11.35□□□□□ -0.59
CLIP1-209ENST00000537178 PI4K2BG5E9Z4 385 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 MAP3K10Q02779 954 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 FOXD4Q12950 439 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-209ENST00000537178 NR5A1Q13285 461 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 E2F4Q16254 413 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 CDO1Q16878 200 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 SCARA5Q6ZMJ2 495 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 SLC26A7Q8TE54 656 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 CYP26B1Q9NR63 512 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 NDE1Q9NXR1 346 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 SNX24Q9Y343 169 aa11.35□□□□□ -0.59
CLIP1-209ENST00000537178 PHRF1Q9P1Y6 1649 aaKnown RBP11.35□□□□□ -0.59
CLIP1-209ENST00000537178 CLRN2A0PK11 232 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 H0Y3Z8 333 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 SLC16A2P36021 539 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 RC3H1Q5TC82 1133 aaKnown RBP11.34□□□□□ -0.59
CLIP1-209ENST00000537178 LRRC31Q6UY01 552 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 TOGARAM2Q6ZUX3 1019 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 MB21D1Q8N884 522 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 TTC8Q8TAM2 541 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 FSD1LQ9BXM9 530 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 COG4Q9H9E3 785 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 ARHGAP26Q9UNA1 814 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 M0R2C6 588 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 MAGEA9P43362 315 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 FAM47EQ6ZV65 393 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 IL17REQ8NFR9 667 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 HSPH1Q92598 858 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 CCDC90BQ9GZT6 254 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 VPS11Q9H270 941 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 ASNSD1Q9NWL6 643 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 CNOT8Q9UFF9 292 aaKnown RBP11.34□□□□□ -0.59
CLIP1-209ENST00000537178 ZFP69BQ9UJL9 534 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 ANAPC7Q9UJX3 599 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 MFAP3LO75121 409 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 BBOX1O75936 387 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 TRIM60Q495X7 471 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 KIAA1755Q5JYT7 1200 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 TADA2BQ86TJ2 420 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 COA7Q96BR5 231 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 DYDC2Q96IM9 177 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 SLITRK6Q9H5Y7 841 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 TOPORSQ9NS56 1045 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-209ENST00000537178 STRIP2Q9ULQ0 834 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 TSPOAP1O95153 1857 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 ANO9A1A5B4 782 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 APOA1P02647 267 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 OCM2P0CE71 109 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 OCMP0CE72 109 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-209ENST00000537178 PNMA6AP0CW24 399 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-209ENST00000537178 KCNA4P22459 653 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 ADORA1P30542 326 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 LIFRP42702 1097 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 CATSPER4Q7RTX7 472 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 PAGE5Q96GU1 130 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 ACAP3Q96P50 834 aa11.34□□□□□ -0.59
CLIP1-209ENST00000537178 GOLGA8MH3BSY2 632 aa11.33□□□□□ -0.59
CLIP1-209ENST00000537178 CALB1P05937 261 aa11.33□□□□□ -0.59
CLIP1-209ENST00000537178 CDC25AP30304 524 aa11.33□□□□□ -0.59
CLIP1-209ENST00000537178 ADD2P35612 726 aa11.33□□□□□ -0.59
CLIP1-209ENST00000537178 NSUN2Q08J23 767 aaKnown RBP eCLIP11.33□□□□□ -0.59
CLIP1-209ENST00000537178 DYNC1I2Q13409 638 aaKnown RBP11.33□□□□□ -0.59
CLIP1-209ENST00000537178 TERF2Q15554 542 aa11.33□□□□□ -0.59
CLIP1-209ENST00000537178 SLC10A5Q5PT55 438 aa11.33□□□□□ -0.59
CLIP1-209ENST00000537178 BHMT2Q9H2M3 363 aa11.33□□□□□ -0.59
CLIP1-209ENST00000537178 HACD3Q9P035 362 aa11.33□□□□□ -0.59
CLIP1-209ENST00000537178 PI4KBQ9UBF8 816 aa11.33□□□□□ -0.59
CLIP1-209ENST00000537178 HNRNPH2P55795 449 aaKnown RBP11.33□□□□□ -0.6
CLIP1-209ENST00000537178 PDCLQ13371 301 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 KRT31Q15323 416 aa11.33□□□□□ -0.6
CLIP1-209ENST00000537178 EPM2AIP1Q7L775 607 aaPredicted RBP11.33□□□□□ -0.6
CLIP1-209ENST00000537178 THEM5Q8N1Q8 247 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms