RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 STK17AQ9UEE5 414 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 RWDD2AQ9UIY3 292 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 TRANK1O15050 2925 aa13.22□□□□□ -0.29
CLIP1-208ENST00000537004 NRCAMQ92823 1304 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 CYP3A7-CYP3A51PA0A087WV96 503 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 RHOBTB3O94955 611 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 SFPQP23246 707 aaKnown RBP eCLIP13.21□□□□□ -0.29
CLIP1-208ENST00000537004 CYP3A7P24462 503 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 PRCPP42785 496 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 AMPD3Q01432 767 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 PLCB4Q15147 1175 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 KRT79Q5XKE5 535 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 MOXD1Q6UVY6 613 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 SNX29Q8TEQ0 813 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 NELFBQ8WX92 580 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 MBOAT7Q96N66 472 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 PNMA5Q96PV4 448 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 C7orf25Q9BPX7 421 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 PCDHA12Q9UN75 941 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 TRPC6Q9Y210 931 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 SLC4A7Q9Y6M7 1214 aa13.21□□□□□ -0.29
CLIP1-208ENST00000537004 IGKV6D-21A0A0A0MT36 114 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 RSPH10B2B2RC85 870 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 CHMP2AO43633 222 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 RSPH10BP0C881 870 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 GNAT1P11488 350 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 ATP4AP20648 1035 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 RFC2P35250 354 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 DNTTIP2Q5QJE6 756 aaKnown RBP13.2□□□□□ -0.3
CLIP1-208ENST00000537004 ZNF697Q5TEC3 545 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 GUCD1Q96NT3 240 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 SEMA6BQ9H3T3 888 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 TBC1D22BQ9NU19 505 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 BLOC1S4Q9NUP1 217 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 MAPK8IP1Q9UQF2 711 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 A0A1B0GTH6 734 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 PFKMP08237 780 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 ASIC1P78348 528 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 PTPN21Q16825 1174 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 TPD52L1Q16890 204 aaPredicted RBP13.2□□□□□ -0.3
CLIP1-208ENST00000537004 SV2BQ7L1I2 683 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 PLPPR4Q7Z2D5 763 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 ADSSL1Q8N142 457 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 LARP4BQ92615 738 aaKnown RBP13.2□□□□□ -0.3
CLIP1-208ENST00000537004 KCNMB3Q9NPA1 279 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 SAMM50Q9Y512 469 aa13.2□□□□□ -0.3
CLIP1-208ENST00000537004 POTEB3A0JP26 581 aa13.19□□□□□ -0.3
CLIP1-208ENST00000537004 GAS7O60861 476 aa13.19□□□□□ -0.3
CLIP1-208ENST00000537004 CXCL10P02778 98 aa13.19□□□□□ -0.3
CLIP1-208ENST00000537004 ATP2A2P16615 1042 aaKnown RBP13.19□□□□□ -0.3
CLIP1-208ENST00000537004 TMEM119Q4V9L6 283 aa13.19□□□□□ -0.3
CLIP1-208ENST00000537004 POTEBQ6S5H4 581 aa13.19□□□□□ -0.3
CLIP1-208ENST00000537004 APTXQ7Z2E3 356 aaKnown RBP13.19□□□□□ -0.3
CLIP1-208ENST00000537004 DNAJB3Q8WWF6 145 aa13.19□□□□□ -0.3
CLIP1-208ENST00000537004 CCDC47Q96A33 483 aaKnown RBP13.19□□□□□ -0.3
CLIP1-208ENST00000537004 FAM49AQ9H0Q0 323 aaPredicted RBP13.19□□□□□ -0.3
CLIP1-208ENST00000537004 MTIF3Q9H2K0 278 aaKnown RBP13.19□□□□□ -0.3
CLIP1-208ENST00000537004 ZNF302Q9NR11 478 aa13.19□□□□□ -0.3
CLIP1-208ENST00000537004 EXOC1Q9NV70 894 aa13.19□□□□□ -0.3
CLIP1-208ENST00000537004 YBX2Q9Y2T7 364 aaKnown RBP13.19□□□□□ -0.3
CLIP1-208ENST00000537004 MBLAC1A4D2B0 266 aaPredicted RBP13.18□□□□□ -0.3
CLIP1-208ENST00000537004 CHRNA1P02708 482 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 TMEM62Q0P6H9 643 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 STIM1Q13586 685 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 MCM6Q14566 821 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 NR1I3Q14994 352 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 Q4G0T1 1027 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 LRCH2Q5VUJ6 765 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 ZNF746Q6NUN9 644 aaPredicted RBP13.18□□□□□ -0.3
CLIP1-208ENST00000537004 SLFN12Q8IYM2 578 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 DBF4BQ8NFT6 615 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 RAD54LQ92698 747 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 SLC5A5Q92911 643 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 TIFAQ96CG3 184 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 PDCL3Q9H2J4 239 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 UNC45AQ9H3U1 944 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 GABBR1Q9UBS5 961 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 R3HCC1Q9Y3T6 440 aaKnown RBP13.18□□□□□ -0.3
CLIP1-208ENST00000537004 PCDHA10Q9Y5I2 948 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 LOXHD1Q8IVV2 1947 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 MYO9BQ13459 2157 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 ACTN1P12814 892 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 DEFB103AP81534 67 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 KRT76Q01546 638 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 GRIN2CQ14957 1233 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 UGCGQ16739 394 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 SPECC1LQ69YQ0 1117 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 MIS18BP1Q6P0N0 1132 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 ETNPPLQ8TBG4 499 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 TCEAL9Q9UHQ7 104 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 MYH11P35749 1972 aa13.18□□□□□ -0.3
CLIP1-208ENST00000537004 MYMKA6NI61 221 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 ZBTB42B2RXF5 422 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 PSMA7O14818 248 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 TBX3O15119 743 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 ZNF862O60290 1169 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 PSMD10O75832 226 aa13.17□□□□□ -0.3
CLIP1-208ENST00000537004 CCT6AP40227 531 aaKnown RBP13.17□□□□□ -0.3
CLIP1-208ENST00000537004 WDR5P61964 334 aaKnown RBP13.17□□□□□ -0.3
CLIP1-208ENST00000537004 TBX2Q13207 712 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms