RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 CARD6Q9BX69 1037 aa3.63□□□□□ -1.83
CSDE1-216ENST00000534389 TRIM5Q9C035 493 aa3.63□□□□□ -1.83
CSDE1-216ENST00000534389 CAAP1Q9H8G2 361 aa3.63□□□□□ -1.83
CSDE1-216ENST00000534389 TRIM39Q9HCM9 518 aa3.63□□□□□ -1.83
CSDE1-216ENST00000534389 A1CFQ9NQ94 594 aaKnown RBP3.63□□□□□ -1.83
CSDE1-216ENST00000534389 RIC8BQ9NVN3 520 aa3.63□□□□□ -1.83
CSDE1-216ENST00000534389 GNL3LQ9NVN8 582 aaKnown RBP3.63□□□□□ -1.83
CSDE1-216ENST00000534389 RBM28Q9NW13 759 aaKnown RBP3.63□□□□□ -1.83
CSDE1-216ENST00000534389 MYOTQ9UBF9 498 aa3.63□□□□□ -1.83
CSDE1-216ENST00000534389 CLIP2Q9UDT6 1046 aa3.63□□□□□ -1.83
CSDE1-216ENST00000534389 SIT1Q9Y3P8 196 aa3.63□□□□□ -1.83
CSDE1-216ENST00000534389 TTC21BQ7Z4L5 1316 aa3.63□□□□□ -1.83
CSDE1-216ENST00000534389 WDR33Q9C0J8 1336 aaKnown RBP3.63□□□□□ -1.83
CSDE1-216ENST00000534389 NESP48681 1621 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ADCY10Q96PN6 1610 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 CD109Q6YHK3 1445 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 YTHDC2Q9H6S0 1430 aaKnown RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ITSN2Q9NZM3 1697 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ERCC6Q03468 1493 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 KNDC1Q76NI1 1749 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 A0A087WWV3 80 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 SLC12A8A0AV02 714 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 PRAMEF25A6NGN4 478 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ARVCFO00192 962 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 SCDO00767 359 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 KCNK3O14649 394 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 SLC27A2O14975 620 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 KCNQ2O43526 872 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 HTATSF1O43719 755 aaKnown RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 PPP1R11O60927 126 aaPredicted RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 RAB11FIP3O75154 756 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 PPFIA4O75335 1185 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 SMC2O95347 1197 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 CAPNS1P04632 268 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 TPM1P09493 284 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 CT47B1P0C2W7 299 aaPredicted RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 GLI4P10075 376 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 TAL1P17542 331 aaPredicted RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 PFKLP17858 780 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 GPTP24298 496 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ELF1P32519 619 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 MASP1P48740 699 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 EVCP57679 992 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ERVFRD-1P60508 538 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 PRR5P85299 388 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ZNF200P98182 395 aaPredicted RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 NFKB2Q00653 900 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 OCRLQ01968 901 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 GRIN1Q05586 938 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ST3GAL1Q11201 340 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 TRDNQ13061 729 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 TMEM132BQ14DG7 1078 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ZKSCAN8Q15776 578 aaPredicted RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 PKN1Q16512 942 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 CAMK4Q16566 473 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 PREPLQ4J6C6 727 aaPredicted RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 TM4SF20Q53R12 229 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 GORABQ5T7V8 394 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ISM2Q6H9L7 571 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ARMCX5Q6P1M9 558 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 TLDC1Q6P9B6 456 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 SARM1Q6SZW1 724 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 RPTNQ6XPR3 784 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ZNF662Q6ZS27 426 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 C11orf57Q6ZUT1 292 aaPredicted RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 CBLL1Q75N03 491 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 RUFY3Q7L099 469 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 NLRP10Q86W26 655 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 NBPF5PQ86XG9 351 aaPredicted RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 PTRH1Q86Y79 214 aaKnown RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 RIOX2Q8IUF8 465 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 EFCAB13Q8IY85 973 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 STAG1Q8WVM7 1258 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 DDX1Q92499 740 aaKnown RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ERCC4Q92889 916 aaPredicted RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 SCLYQ96I15 445 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 SLC38A3Q99624 504 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 MTA3Q9BTC8 594 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 PARD6BQ9BYG5 372 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 CELF4Q9BZC1 486 aaKnown RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 SMOC1Q9H4F8 434 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 DCTPP1Q9H773 170 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 PDE11AQ9HCR9 933 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 TNFRSF12AQ9NP84 129 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 SLC6A20Q9NP91 592 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 MAPRE3Q9UPY8 281 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 MTMR6Q9Y217 621 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ATP23Q9Y6H3 246 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 X6R8D5 127 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 ELP1O95163 1332 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 SOS1Q07889 1333 aaPredicted RBP3.62□□□□□ -1.83
CSDE1-216ENST00000534389 TCHHQ07283 1943 aa3.62□□□□□ -1.83
CSDE1-216ENST00000534389 RGS12O14924 1447 aa3.61□□□□□ -1.83
CSDE1-216ENST00000534389 NUP160Q12769 1436 aa3.61□□□□□ -1.83
CSDE1-216ENST00000534389 ADGRB2O60241 1585 aa3.61□□□□□ -1.83
CSDE1-216ENST00000534389 PTPDC1A2A3K4 754 aa3.61□□□□□ -1.83
CSDE1-216ENST00000534389 NOTOA8MTQ0 251 aa3.61□□□□□ -1.83
CSDE1-216ENST00000534389 ARNTLO00327 626 aa3.61□□□□□ -1.83
CSDE1-216ENST00000534389 MPHOSPH10O00566 681 aaKnown RBP3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms