RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 TRAPPC12Q8WVT3 735 aa12.18□□□□□ -0.46
CSDE1-215ENST00000533818 FGF14Q92915 247 aa12.18□□□□□ -0.46
CSDE1-215ENST00000533818 PHKBQ93100 1093 aa12.18□□□□□ -0.46
CSDE1-215ENST00000533818 IGSF21Q96ID5 467 aa12.18□□□□□ -0.46
CSDE1-215ENST00000533818 BBC3Q96PG8 261 aaPredicted RBP12.18□□□□□ -0.46
CSDE1-215ENST00000533818 SEC62Q99442 399 aaKnown RBP12.18□□□□□ -0.46
CSDE1-215ENST00000533818 AMNQ9BXJ7 453 aa12.18□□□□□ -0.46
CSDE1-215ENST00000533818 MRPS17Q9Y2R5 130 aaKnown RBP12.18□□□□□ -0.46
CSDE1-215ENST00000533818 GPSM3Q9Y4H4 160 aa12.18□□□□□ -0.46
CSDE1-215ENST00000533818 MYH7P12883 1935 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 GSTTP1A0A1W2PQM5 241 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 AXIN1O15169 862 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 ZC3H11AO75152 810 aaKnown RBP eCLIP12.17□□□□□ -0.46
CSDE1-215ENST00000533818 SSBP05455 408 aaKnown RBP eCLIP12.17□□□□□ -0.46
CSDE1-215ENST00000533818 CNR2P34972 360 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 PLCB4Q15147 1175 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 CEP68Q76N32 757 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 ECHDC2Q86YB7 292 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 ITPRIPQ8IWB1 547 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 GIMAP8Q8ND71 665 aaPredicted RBP12.17□□□□□ -0.46
CSDE1-215ENST00000533818 GLIS3Q8NEA6 775 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 HELQQ8TDG4 1101 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 TNPO1Q92973 898 aaKnown RBP12.17□□□□□ -0.46
CSDE1-215ENST00000533818 MRPL9Q9BYD2 267 aaKnown RBP12.17□□□□□ -0.46
CSDE1-215ENST00000533818 ARRDC1-AS1Q9H2J1 176 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 JMJD4Q9H9V9 463 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 DPP7Q9UHL4 492 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 ANAPC4Q9UJX5 808 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 ZFP37Q9Y6Q3 630 aaPredicted RBP12.17□□□□□ -0.46
CSDE1-215ENST00000533818 C2orf16Q68DN1 1984 aa12.17□□□□□ -0.46
CSDE1-215ENST00000533818 WDFY3Q8IZQ1 3526 aa12.16□□□□□ -0.46
CSDE1-215ENST00000533818 ZNF316A6NFI3 1004 aaPredicted RBP12.16□□□□□ -0.46
CSDE1-215ENST00000533818 CHURC1-FNTBB4DL54 471 aa12.16□□□□□ -0.46
CSDE1-215ENST00000533818 GCOM1H8Y6P7 765 aaPredicted RBP12.16□□□□□ -0.46
CSDE1-215ENST00000533818 RAB11FIP3O75154 756 aa12.16□□□□□ -0.46
CSDE1-215ENST00000533818 FGRP09769 529 aa12.16□□□□□ -0.46
CSDE1-215ENST00000533818 POLR2MP0CAP2 368 aa12.16□□□□□ -0.46
CSDE1-215ENST00000533818 FNTBP49356 437 aa12.16□□□□□ -0.46
CSDE1-215ENST00000533818 CCR3P51677 355 aa12.16□□□□□ -0.46
CSDE1-215ENST00000533818 ZKSCAN2Q63HK3 967 aa12.16□□□□□ -0.46
CSDE1-215ENST00000533818 FAM228AQ86W67 206 aa12.16□□□□□ -0.46
CSDE1-215ENST00000533818 BCL7CQ8WUZ0 217 aaPredicted RBP12.16□□□□□ -0.46
CSDE1-215ENST00000533818 ZNF707Q96C28 371 aaPredicted RBP12.16□□□□□ -0.46
CSDE1-215ENST00000533818 CHRDQ9H2X0 955 aa12.16□□□□□ -0.46
CSDE1-215ENST00000533818 RALGAPA1Q6GYQ0 2036 aa12.16□□□□□ -0.46
CSDE1-215ENST00000533818 CARNS1A5YM72 827 aa12.15□□□□□ -0.46
CSDE1-215ENST00000533818 COL28A1Q2UY09 1125 aa12.15□□□□□ -0.46
CSDE1-215ENST00000533818 RNF43Q68DV7 783 aa12.15□□□□□ -0.46
CSDE1-215ENST00000533818 MTHFD1LQ6UB35 978 aa12.15□□□□□ -0.46
CSDE1-215ENST00000533818 VN1R3Q9BXE9 311 aa12.15□□□□□ -0.46
CSDE1-215ENST00000533818 MRPL17Q9NRX2 175 aaKnown RBP12.15□□□□□ -0.46
CSDE1-215ENST00000533818 CACNA2D2Q9NY47 1150 aa12.15□□□□□ -0.46
CSDE1-215ENST00000533818 ADAMTS20P59510 1910 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 LILRB3O75022 631 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 ZSCAN20P17040 1043 aaPredicted RBP12.14□□□□□ -0.47
CSDE1-215ENST00000533818 KLRC1P26715 233 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 CXCL12P48061 93 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 CRYBB1P53674 252 aaPredicted RBP12.14□□□□□ -0.47
CSDE1-215ENST00000533818 C19orf57Q0VDD7 668 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 KIZQ2M2Z5 673 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 MTSS1LQ765P7 747 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 KIAA0319LQ8IZA0 1049 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 PPP1R16BQ96T49 567 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 IER2Q9BTL4 223 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 NT5C3AQ9H0P0 336 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 NDRG2Q9UN36 371 aaKnown RBP12.14□□□□□ -0.47
CSDE1-215ENST00000533818 NEUROG3Q9Y4Z2 214 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 LAMA4Q16363 1823 aa12.14□□□□□ -0.47
CSDE1-215ENST00000533818 C2CD2LO14523 706 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 PPP1R11O60927 126 aaPredicted RBP12.13□□□□□ -0.47
CSDE1-215ENST00000533818 ATP9AO75110 1047 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 GLUD1P00367 558 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 ADH1AP07327 375 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 GALTP07902 379 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 SPATA31D3P0C874 917 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 FSHRP23945 695 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 SATB1Q01826 763 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 ASPRV1Q53RT3 343 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 SH3PXD2AQ5TCZ1 1133 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 HEATR6Q6AI08 1181 aaKnown RBP12.13□□□□□ -0.47
CSDE1-215ENST00000533818 SPATA31D4Q6ZUB0 917 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 NLRX1Q86UT6 975 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 LONP2Q86WA8 852 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 PROSER1Q86XN7 944 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 FTSJ3Q8IY81 847 aaKnown RBP12.13□□□□□ -0.47
CSDE1-215ENST00000533818 OSMRQ99650 979 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 AZI2Q9H6S1 392 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 ECHDC1Q9NTX5 307 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 STK39Q9UEW8 545 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 CDH7Q9ULB5 785 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 TENM4Q6N022 2769 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 DOCK8Q8NF50 2099 aa12.13□□□□□ -0.47
CSDE1-215ENST00000533818 FOXP2O15409 715 aa12.12□□□□□ -0.47
CSDE1-215ENST00000533818 SEC24BO95487 1268 aa12.12□□□□□ -0.47
CSDE1-215ENST00000533818 AK2P54819 239 aa12.12□□□□□ -0.47
CSDE1-215ENST00000533818 KIAA1211LQ6NV74 962 aa12.12□□□□□ -0.47
CSDE1-215ENST00000533818 PNMA1Q8ND90 353 aa12.12□□□□□ -0.47
CSDE1-215ENST00000533818 LOXL4Q96JB6 756 aa12.12□□□□□ -0.47
CSDE1-215ENST00000533818 PCYT2Q99447 389 aa12.12□□□□□ -0.47
CSDE1-215ENST00000533818 KXD1Q9BQD3 176 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms