RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 PADI3Q9ULW8 664 aa9.21□□□□□ -0.93
NEDD8-207ENST00000533242 PCDHB12Q9Y5F1 795 aa9.21□□□□□ -0.93
NEDD8-207ENST00000533242 PCDHA2Q9Y5H9 948 aa9.21□□□□□ -0.93
NEDD8-207ENST00000533242 BTBD18B2RXH4 712 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 DYNC1I1O14576 645 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 MEIS2O14770 477 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 FSCN2O14926 492 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 SRGAP2BP0DMP2 458 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 INSRRP14616 1297 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 U2AF2P26368 475 aaKnown RBP eCLIP9.21□□□□□ -0.94
NEDD8-207ENST00000533242 SMARCA1P28370 1054 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 SARSP49591 514 aaKnown RBP9.21□□□□□ -0.94
NEDD8-207ENST00000533242 TOB1P50616 345 aaPredicted RBP9.21□□□□□ -0.94
NEDD8-207ENST00000533242 IGBP1P78318 339 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 FOXK2Q01167 660 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 NCAPHQ15003 741 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 USP17L6PQ6QN14 398 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 TMEM184AQ6ZMB5 413 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 NME8Q8N427 588 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 ATOH1Q92858 354 aaPredicted RBP9.21□□□□□ -0.94
NEDD8-207ENST00000533242 RRP36Q96EU6 259 aaKnown RBP9.21□□□□□ -0.94
NEDD8-207ENST00000533242 C16orf45Q96MC5 204 aaPredicted RBP9.21□□□□□ -0.94
NEDD8-207ENST00000533242 SPZ1Q9BXG8 430 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 HSD3B7Q9H2F3 369 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 FAM86C1Q9NVL1 165 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 PCDHGC5Q9Y5F6 944 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 UBIAD1Q9Y5Z9 338 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 SLC12A7Q9Y666 1083 aa9.21□□□□□ -0.94
NEDD8-207ENST00000533242 BECN2A8MW95 431 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 PROB1E7EW31 1015 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 CMA1P23946 247 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 GATMP50440 423 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 NR5A1Q13285 461 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 SART3Q15020 963 aaKnown RBP9.2□□□□□ -0.94
NEDD8-207ENST00000533242 FILIP1Q7Z7B0 1213 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 CATIPQ7Z7H3 387 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 LRRC8AQ8IWT6 810 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 VN1R2Q8NFZ6 395 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 MICAL1Q8TDZ2 1067 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 MRFAP1L1Q96HT8 127 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 ARID3AQ99856 593 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 TMX1Q9H3N1 280 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 TLR9Q9NR96 1032 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 HPSEQ9Y251 543 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 PCDHB7Q9Y5E2 793 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 hCG_1642624A0A1W2PR95 340 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 RIOK3O14730 519 aaKnown RBP9.2□□□□□ -0.94
NEDD8-207ENST00000533242 MAFGO15525 162 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 CAVIN2O95810 425 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 TPM3P06753 285 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 ITGB5P18084 799 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 CDC25BP30305 580 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 PNOCQ13519 176 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 CEP57L1Q8IYX8 460 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 OXER1Q8TDS5 423 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 PCYT2Q99447 389 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 LZTS2Q9BRK4 669 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 S1PR5Q9H228 398 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 ERVK-5Q9HDB9 667 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 JADE2Q9NQC1 790 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 C1orf112Q9NSG2 853 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 LZTS1Q9Y250 596 aa9.2□□□□□ -0.94
NEDD8-207ENST00000533242 SMIM35A0A1B0GVV1 85 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 FAM205CA6NFA0 338 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 CCDC69A6NI79 296 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 PER2O15055 1255 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 GALR2O43603 387 aaPredicted RBP9.19□□□□□ -0.94
NEDD8-207ENST00000533242 CDKL5O76039 1030 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 IFNAR1P17181 557 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 CCZ1BP86790 482 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 CCZ1P86791 482 aaPredicted RBP9.19□□□□□ -0.94
NEDD8-207ENST00000533242 KRT76Q01546 638 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 MTMR1Q13613 665 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 KCNC3Q14003 757 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 PLCB4Q15147 1175 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 ODR4Q5SWX8 454 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 SPOUT1Q5T280 376 aaKnown RBP9.19□□□□□ -0.94
NEDD8-207ENST00000533242 ANKRD54Q6NXT1 300 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 COLGALT1Q8NBJ5 622 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 ZBTB10Q96DT7 871 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 PRIMPOLQ96LW4 560 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 RIPOR3Q96MK2 946 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 AZI2Q9H6S1 392 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 SEC63Q9UGP8 760 aaKnown RBP9.19□□□□□ -0.94
NEDD8-207ENST00000533242 TRPC6Q9Y210 931 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 EVPLQ92817 2033 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 TBKBP1A7MCY6 615 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 FGF18O76093 207 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 DDAH1O94760 285 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 ATP1A3P13637 1013 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 BMP6P22004 513 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 KIF5BP33176 963 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 TMEM62Q0P6H9 643 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 LONRF3Q496Y0 759 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 PLPPR4Q7Z2D5 763 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 DIS3L2Q8IYB7 885 aaKnown RBP9.19□□□□□ -0.94
NEDD8-207ENST00000533242 RASGRP4Q8TDF6 673 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 JPH1Q9HDC5 661 aaPredicted RBP9.19□□□□□ -0.94
NEDD8-207ENST00000533242 RGS18Q9NS28 235 aa9.19□□□□□ -0.94
NEDD8-207ENST00000533242 PKD2L1Q9P0L9 805 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms