RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 PCDHA2Q9Y5H9 948 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 RALGAPA1Q6GYQ0 2036 aa9.46□□□□□ -0.9
CD44-232ENST00000531118 A0A0D9SFI3 127 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 HOXA2O43364 376 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 N4BP1O75113 896 aaKnown RBP9.45□□□□□ -0.9
CD44-232ENST00000531118 SRFP11831 508 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 GLULP15104 373 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 DMWDQ09019 674 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 ZNF528Q3MIS6 628 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 CCDC178Q5BJE1 867 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 PPM1JQ5JR12 505 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 PHLDB3Q6NSJ2 640 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 FAM43BQ6ZT52 329 aaPredicted RBP9.45□□□□□ -0.9
CD44-232ENST00000531118 GPR149Q86SP6 731 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 ZNF589Q86UQ0 364 aaPredicted RBP9.45□□□□□ -0.9
CD44-232ENST00000531118 CABP7Q86V35 215 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 IQCA1Q86XH1 822 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 ENAHQ8N8S7 591 aaPredicted RBP9.45□□□□□ -0.9
CD44-232ENST00000531118 GIMAP8Q8ND71 665 aaPredicted RBP9.45□□□□□ -0.9
CD44-232ENST00000531118 PJA1Q8NG27 643 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 OTUD7AQ8TE49 926 aaPredicted RBP9.45□□□□□ -0.9
CD44-232ENST00000531118 SLC22A17Q8WUG5 538 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 RSAD2Q8WXG1 361 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 AUTS2Q8WXX7 1259 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 SEPT1Q8WYJ6 367 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 SMARCAD1Q9H4L7 1026 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 ELAC1Q9H777 363 aaKnown RBP9.45□□□□□ -0.9
CD44-232ENST00000531118 GINS2Q9Y248 185 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 PCDHB3Q9Y5E6 796 aa9.45□□□□□ -0.9
CD44-232ENST00000531118 SMIM35A0A1B0GVV1 85 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 NONOQ15233 471 aaKnown RBP eCLIP9.44□□□□□ -0.9
CD44-232ENST00000531118 SLC35G1Q2M3R5 365 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 PCNX4Q63HM2 1172 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 NLRX1Q86UT6 975 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 FAM228AQ86W67 206 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 GPR152Q8TDT2 470 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 SECISBP2LQ93073 1101 aaKnown RBP9.44□□□□□ -0.9
CD44-232ENST00000531118 GPRASP2Q96D09 838 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 PCYT2Q99447 389 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 FOXQ1Q9C009 403 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 EPC1Q9H2F5 836 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 PARD6AQ9NPB6 346 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 HELLSQ9NRZ9 838 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 ST3GAL5Q9UNP4 418 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 PCDHGA2Q9Y5H1 932 aa9.44□□□□□ -0.9
CD44-232ENST00000531118 MYH9P35579 1960 aaKnown RBP9.44□□□□□ -0.9
CD44-232ENST00000531118 WDR81Q562E7 1941 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 MTCL1Q9Y4B5 1905 aaKnown RBP9.43□□□□□ -0.9
CD44-232ENST00000531118 CLUHO75153 1309 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 KLRF2D3W0D1 207 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 ATP9AO75110 1047 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 LRRN2O75325 713 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 TGM1P22735 817 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 NT5C2P49902 561 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 METAP2P50579 478 aaKnown RBP eCLIP9.43□□□□□ -0.9
CD44-232ENST00000531118 DSC3Q14574 896 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 BMS1Q14692 1282 aaKnown RBP9.43□□□□□ -0.9
CD44-232ENST00000531118 PLCB4Q15147 1175 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 LETM2Q2VYF4 491 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 CLLU1OSQ5K130 101 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 ODR4Q5SWX8 454 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 MTHFD1LQ6UB35 978 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 TMEM173Q86WV6 379 aaPredicted RBP9.43□□□□□ -0.9
CD44-232ENST00000531118 ABI1Q8IZP0 508 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 NETO1Q8TDF5 533 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 TMEM169Q96HH4 297 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 FAM227BQ96M60 508 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 PIGSQ96S52 555 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 ZSCAN10Q96SZ4 725 aaPredicted RBP9.43□□□□□ -0.9
CD44-232ENST00000531118 OSMRQ99650 979 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 PKD2L1Q9P0L9 805 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 EPS15L1Q9UBC2 864 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 MAD2L2Q9UI95 211 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 FBXO4Q9UKT5 387 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 SIT1Q9Y3P8 196 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 IRAK3Q9Y616 596 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 DOCK6Q96HP0 2047 aa9.43□□□□□ -0.9
CD44-232ENST00000531118 FRYQ5TBA9 3013 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 B4E1Z4 1266 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 NT5C1B-RDH14C9J2C7 533 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 SLC30A4O14863 429 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 GPR182O15218 404 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 LILRB5O75023 590 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 CXCL14O95715 111 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 CTSAP10619 480 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 MX1P20591 662 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 GBP2P32456 591 aaPredicted RBP9.42□□□□□ -0.9
CD44-232ENST00000531118 FAM189BP81408 668 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 FUT2Q10981 343 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 TRAF1Q13077 416 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 PTPN14Q15678 1187 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 C15orf39Q6ZRI6 1047 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 VPS52Q8N1B4 723 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 NME8Q8N427 588 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 TMEM87AQ8NBN3 555 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 SPIRE2Q8WWL2 714 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 BORCS6Q96GS4 357 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 CDHR1Q96JP9 859 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 PPP1R16BQ96T49 567 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 MRPL9Q9BYD2 267 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms