RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 MTMR9Q96QG7 549 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 TMEM117Q9H0C3 514 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 ALG13Q9NP73 1137 aaKnown RBP14.87□□□□□ -0.03
VPS28-211ENST00000530790 PLAGL2Q9UPG8 496 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 PCDHB12Q9Y5F1 795 aa14.87□□□□□ -0.03
VPS28-211ENST00000530790 A0A0U1RQF3 1178 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 POTEMA6NI47 508 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 LAG3P18627 525 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 ORC2Q13416 577 aaPredicted RBP14.86□□□□□ -0.03
VPS28-211ENST00000530790 CSPP1Q1MSJ5 1256 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 TWF2Q6IBS0 349 aaKnown RBP14.86□□□□□ -0.03
VPS28-211ENST00000530790 EP400NLQ6ZTU2 488 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 CATSPER4Q7RTX7 472 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 NOSTRINQ8IVI9 506 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 KSR1Q8IVT5 923 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 LRRC43Q8N309 656 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 PPP2R3CQ969Q6 453 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 TMEM143Q96AN5 459 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 PABPC5Q96DU9 382 aaKnown RBP14.86□□□□□ -0.03
VPS28-211ENST00000530790 MTRQ99707 1265 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 CHST12Q9NRB3 414 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 NOL7Q9UMY1 257 aaKnown RBP14.86□□□□□ -0.03
VPS28-211ENST00000530790 PIN4Q9Y237 131 aaKnown RBP14.86□□□□□ -0.03
VPS28-211ENST00000530790 KIF3AQ9Y496 699 aa14.86□□□□□ -0.03
VPS28-211ENST00000530790 ARID2Q68CP9 1835 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.85□□□□□ -0.03
VPS28-211ENST00000530790 NCK2O43639 380 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 SLITRK3O94933 977 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 LYPLA2O95372 231 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 OR52Z1P0C646 297 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 LEXMQ3ZCV2 418 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 THNSL1Q8IYQ7 743 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 COLGALT1Q8NBJ5 622 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 PRPF31Q8WWY3 499 aaKnown RBP14.85□□□□□ -0.03
VPS28-211ENST00000530790 NECAB3Q96P71 396 aaPredicted RBP14.85□□□□□ -0.03
VPS28-211ENST00000530790 HSD17B14Q9BPX1 270 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 TMEM60Q9H2L4 133 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 TYW1Q9NV66 732 aaKnown RBP14.85□□□□□ -0.03
VPS28-211ENST00000530790 CLDND1Q9NY35 253 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 HCSTQ9UBK5 93 aa14.85□□□□□ -0.03
VPS28-211ENST00000530790 FNDC1Q4ZHG4 1894 aaPredicted RBP14.84□□□□□ -0.03
VPS28-211ENST00000530790 MUC3AQ02505 3323 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 ZBTB39O15060 712 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 EOMESO95936 686 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 SRGAP2CP0DJJ0 459 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 SKIP12755 728 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 TRAPPC10P48553 1259 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 RAB27AP51159 221 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 UBE3AQ05086 875 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 LAMTOR4Q0VGL1 99 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 COL19A1Q14993 1142 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 TTC38Q5R3I4 469 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 SPPL3Q8TCT6 385 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 POF1BQ8WVV4 589 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 CASD1Q96PB1 797 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 TRAIPQ9BWF2 469 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 MRPL9Q9BYD2 267 aaKnown RBP14.84□□□□□ -0.03
VPS28-211ENST00000530790 IFT122Q9HBG6 1241 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 ANKEF1Q9NU02 776 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 AGPAT5Q9NUQ2 364 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 RNF19AQ9NV58 838 aa14.84□□□□□ -0.03
VPS28-211ENST00000530790 H3BQ06 376 aaPredicted RBP14.83□□□□□ -0.04
VPS28-211ENST00000530790 ASAP2O43150 1006 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 DGAT1O75907 488 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 FGF18O76093 207 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 ATF7P17544 494 aaPredicted RBP14.83□□□□□ -0.04
VPS28-211ENST00000530790 DNAJB1P25685 340 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 PPM1AP35813 382 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 PHKA2P46019 1235 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 HYAL1Q12794 435 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 CAMK1Q14012 370 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 TFDP1Q14186 410 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 MXD4Q14582 209 aaPredicted RBP14.83□□□□□ -0.04
VPS28-211ENST00000530790 ZNF174Q15697 407 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 PUS10Q3MIT2 529 aaKnown RBP14.83□□□□□ -0.04
VPS28-211ENST00000530790 CLLU1OSQ5K130 101 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 SRGAP1Q7Z6B7 1085 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 ZNF598Q86UK7 904 aaKnown RBP14.83□□□□□ -0.04
VPS28-211ENST00000530790 FERMT3Q86UX7 667 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 RNF149Q8NC42 400 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 ERMNQ8TAM6 284 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 HELQQ8TDG4 1101 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 RSPH1Q8WYR4 309 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 CWH43Q9H720 699 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 TUFT1Q9NNX1 390 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 XPNPEP1Q9NQW7 623 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 FAM105AQ9NUU6 356 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 ATG2AQ2TAZ0 1938 aa14.83□□□□□ -0.04
VPS28-211ENST00000530790 ERLIN2O94905 339 aa14.82□□□□□ -0.04
VPS28-211ENST00000530790 TECP42680 631 aa14.82□□□□□ -0.04
VPS28-211ENST00000530790 RARRES1P49788 294 aa14.82□□□□□ -0.04
VPS28-211ENST00000530790 PTCRAQ6ISU1 281 aaPredicted RBP14.82□□□□□ -0.04
VPS28-211ENST00000530790 PIGOQ8TEQ8 1089 aa14.82□□□□□ -0.04
VPS28-211ENST00000530790 ZNF558Q96NG5 402 aa14.82□□□□□ -0.04
VPS28-211ENST00000530790 IGFLR1Q9H665 355 aa14.82□□□□□ -0.04
VPS28-211ENST00000530790 TLR9Q9NR96 1032 aa14.82□□□□□ -0.04
VPS28-211ENST00000530790 USO1O60763 962 aaKnown RBP14.81□□□□□ -0.04
VPS28-211ENST00000530790 U2AF2P26368 475 aaKnown RBP eCLIP14.81□□□□□ -0.04
VPS28-211ENST00000530790 IRS1P35568 1242 aa14.81□□□□□ -0.04
VPS28-211ENST00000530790 MCM2P49736 904 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms