RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 C1orf112Q9NSG2 853 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 ANKEF1Q9NU02 776 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 TMEM161AQ9NX61 479 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 PLAGL2Q9UPG8 496 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 COL4A3BPQ9Y5P4 624 aa11.91□□□□□ -0.5
CD44-227ENST00000528086 A0A0U1RQF3 1178 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 DENND3A2RUS2 1198 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 BDP1A6H8Y1 2624 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 GTPBP6O43824 516 aaPredicted RBP11.9□□□□□ -0.5
CD44-227ENST00000528086 ST18O60284 1047 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 RB1P06400 928 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 GLRA2P23416 452 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 GTF2F1P35269 517 aaKnown RBP eCLIP11.9□□□□□ -0.5
CD44-227ENST00000528086 IRS1P35568 1242 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 LTBRP36941 435 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 TRAPPC10P48553 1259 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 AFF1P51825 1210 aaKnown RBP11.9□□□□□ -0.5
CD44-227ENST00000528086 PTGDRQ13258 359 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 AMHR2Q16671 573 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 TCEAL5Q5H9L2 206 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 POTEGQ6S5H5 508 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 ZNF410Q86VK4 478 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 IGSF22Q8N9C0 903 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 FAM184AQ8NB25 1140 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 KLHL23Q8NBE8 558 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 LRRC15Q8TF66 581 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 BSNDQ8WZ55 320 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 LPPQ93052 612 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 NLRP4Q96MN2 994 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 NECAB3Q96P71 396 aaPredicted RBP11.9□□□□□ -0.5
CD44-227ENST00000528086 POLR3CQ9BUI4 534 aaPredicted RBP11.9□□□□□ -0.5
CD44-227ENST00000528086 TRAIPQ9BWF2 469 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 GCOM2Q9BZD3 368 aaPredicted RBP11.9□□□□□ -0.5
CD44-227ENST00000528086 TYW1Q9NV66 732 aaKnown RBP11.9□□□□□ -0.5
CD44-227ENST00000528086 THEGQ9P2T0 379 aa11.9□□□□□ -0.5
CD44-227ENST00000528086 TTLL13PA6NNM8 815 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 TBKBP1A7MCY6 615 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 MARCH6O60337 910 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 EDN1P05305 212 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 STAG3L1P0CL83 205 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 SRGAP2CP0DJJ0 459 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 RPA1P27694 616 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 CDC25AP30304 524 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 RFC5P40937 340 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 FXR2P51116 673 aaKnown RBP eCLIP11.89□□□□□ -0.51
CD44-227ENST00000528086 POLGP54098 1239 aaPredicted RBP11.89□□□□□ -0.51
CD44-227ENST00000528086 PTENP60484 403 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 ORC2Q13416 577 aaPredicted RBP11.89□□□□□ -0.51
CD44-227ENST00000528086 CAPSQ13938 189 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 KCNK18Q7Z418 384 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 IFNLR1Q8IU57 520 aaPredicted RBP11.89□□□□□ -0.51
CD44-227ENST00000528086 ZNF710Q8N1W2 664 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 ATXN2LQ8WWM7 1075 aaKnown RBP11.89□□□□□ -0.51
CD44-227ENST00000528086 POLD4Q9HCU8 107 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 TUFT1Q9NNX1 390 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 AGPAT5Q9NUQ2 364 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 PPME1Q9Y570 386 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 PCDHB7Q9Y5E2 793 aa11.89□□□□□ -0.51
CD44-227ENST00000528086 DKC1O60832 514 aaKnown RBP eCLIP11.88□□□□□ -0.51
CD44-227ENST00000528086 XRCC6P12956 609 aaKnown RBP eCLIP11.88□□□□□ -0.51
CD44-227ENST00000528086 PBX3P40426 434 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 PHKA2P46019 1235 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 MBTD1Q05BQ5 628 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 DLX2Q07687 328 aaPredicted RBP11.88□□□□□ -0.51
CD44-227ENST00000528086 HYAL1Q12794 435 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 CTC1Q2NKJ3 1217 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 LONRF3Q496Y0 759 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 TJAP1Q5JTD0 557 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 AGMOQ6ZNB7 445 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 FAM43BQ6ZT52 329 aaPredicted RBP11.88□□□□□ -0.51
CD44-227ENST00000528086 OTUD6AQ7L8S5 288 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 ADGRD2Q7Z7M1 963 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 TMEM173Q86WV6 379 aaPredicted RBP11.88□□□□□ -0.51
CD44-227ENST00000528086 RNF149Q8NC42 400 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 NEK9Q8TD19 979 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 PSPC1Q8WXF1 523 aaKnown RBP11.88□□□□□ -0.51
CD44-227ENST00000528086 SLC7A3Q8WY07 619 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 P2RX5Q93086 422 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 MTRQ99707 1265 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 PLVAPQ9BX97 442 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 TMEM117Q9H0C3 514 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 ATP6V0A4Q9HBG4 840 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 DBR1Q9UK59 544 aaKnown RBP11.88□□□□□ -0.51
CD44-227ENST00000528086 LRFN2Q9ULH4 789 aa11.88□□□□□ -0.51
CD44-227ENST00000528086 TRIP11Q15643 1979 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 LINC01565O15544 149 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 TSPAN1O60635 241 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 ZNF623O75123 536 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 MCM2P49736 904 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 DNM2P50570 870 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 ERVFC1P60507 584 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 MRPS5P82675 430 aaKnown RBP11.87□□□□□ -0.51
CD44-227ENST00000528086 ODR4Q5SWX8 454 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 MAEAQ7L5Y9 396 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 MRPL10Q7Z7H8 261 aaKnown RBP11.87□□□□□ -0.51
CD44-227ENST00000528086 COLGALT1Q8NBJ5 622 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 SMG8Q8ND04 991 aaKnown RBP11.87□□□□□ -0.51
CD44-227ENST00000528086 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.87□□□□□ -0.51
CD44-227ENST00000528086 HELQQ8TDG4 1101 aa11.87□□□□□ -0.51
CD44-227ENST00000528086 BCL7CQ8WUZ0 217 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms