RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 STBD1O95210 358 aa26.56■■□□□ 1.84
CPSF1-202ENST00000527827 NIFKQ9BYG3 293 aaKnown RBP26.56■■□□□ 1.84
CPSF1-202ENST00000527827 DACT1Q9NYF0 836 aa26.56■■□□□ 1.84
CPSF1-202ENST00000527827 TMEM150BA6NC51 233 aa26.55■■□□□ 1.84
CPSF1-202ENST00000527827 NT5C1B-RDH14C9J2C7 533 aa26.55■■□□□ 1.84
CPSF1-202ENST00000527827 CLASP2O75122 1294 aaKnown RBP26.55■■□□□ 1.84
CPSF1-202ENST00000527827 BCAR1P56945 870 aa26.55■■□□□ 1.84
CPSF1-202ENST00000527827 MRPL9Q9BYD2 267 aaKnown RBP26.55■■□□□ 1.84
CPSF1-202ENST00000527827 NCOA5Q9HCD5 579 aaKnown RBP26.55■■□□□ 1.84
CPSF1-202ENST00000527827 SH3GLB2Q9NR46 395 aa26.55■■□□□ 1.84
CPSF1-202ENST00000527827 CACNA1HO95180 2353 aa26.55■■□□□ 1.84
CPSF1-202ENST00000527827 IGKV6-21A0A0C4DH24 114 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 PDIA3P30101 505 aaKnown RBP26.54■■□□□ 1.84
CPSF1-202ENST00000527827 EVCP57679 992 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 CCT2P78371 535 aaKnown RBP26.54■■□□□ 1.84
CPSF1-202ENST00000527827 MTERF2Q49AM1 385 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 Q4G0T1 1027 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 TPRNQ4KMQ1 711 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 B3GNT9Q6UX72 402 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 MIER3Q7Z3K6 550 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 RDM1Q8NG50 284 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 TBCKQ8TEA7 893 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 GCOM2Q9BZD3 368 aaPredicted RBP26.54■■□□□ 1.84
CPSF1-202ENST00000527827 ADAM7Q9H2U9 754 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 POMKQ9H5K3 350 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 CHST12Q9NRB3 414 aa26.54■■□□□ 1.84
CPSF1-202ENST00000527827 SEPT9Q9UHD8 586 aaPredicted RBP26.54■■□□□ 1.84
CPSF1-202ENST00000527827 AVPR2P30518 371 aa26.53■■□□□ 1.84
CPSF1-202ENST00000527827 PHKA2P46019 1235 aa26.53■■□□□ 1.84
CPSF1-202ENST00000527827 ALDH7A1P49419 539 aaKnown RBP26.53■■□□□ 1.84
CPSF1-202ENST00000527827 NLRP5P59047 1200 aa26.53■■□□□ 1.84
CPSF1-202ENST00000527827 XKR3Q5GH77 459 aa26.53■■□□□ 1.84
CPSF1-202ENST00000527827 TMEM173Q86WV6 379 aaPredicted RBP26.53■■□□□ 1.84
CPSF1-202ENST00000527827 SH2D3AQ9BRG2 576 aa26.53■■□□□ 1.84
CPSF1-202ENST00000527827 TRAIPQ9BWF2 469 aa26.53■■□□□ 1.84
CPSF1-202ENST00000527827 NR2E1Q9Y466 385 aa26.53■■□□□ 1.84
CPSF1-202ENST00000527827 A0A087WZ62 844 aa26.52■■□□□ 1.84
CPSF1-202ENST00000527827 TDP2O95551 362 aa26.52■■□□□ 1.84
CPSF1-202ENST00000527827 CXCL14O95715 111 aa26.52■■□□□ 1.84
CPSF1-202ENST00000527827 PDGFBP01127 241 aaPredicted RBP26.52■■□□□ 1.84
CPSF1-202ENST00000527827 CDC42EP1Q00587 391 aa26.52■■□□□ 1.84
CPSF1-202ENST00000527827 ITIH3Q06033 890 aa26.52■■□□□ 1.84
CPSF1-202ENST00000527827 ZBTB33Q86T24 672 aa26.52■■□□□ 1.84
CPSF1-202ENST00000527827 TMEM169Q96HH4 297 aa26.52■■□□□ 1.84
CPSF1-202ENST00000527827 FDXACB1Q9BRP7 624 aaPredicted RBP26.52■■□□□ 1.84
CPSF1-202ENST00000527827 TSHZ2Q9NRE2 1034 aa26.52■■□□□ 1.84
CPSF1-202ENST00000527827 CYP3A7-CYP3A51PA0A087WV96 503 aa26.51■■□□□ 1.83
CPSF1-202ENST00000527827 C2CD4DB7Z1M9 353 aa26.51■■□□□ 1.83
CPSF1-202ENST00000527827 CYP3A7P24462 503 aa26.51■■□□□ 1.83
CPSF1-202ENST00000527827 CES5AQ6NT32 575 aa26.51■■□□□ 1.83
CPSF1-202ENST00000527827 VPS52Q8N1B4 723 aa26.51■■□□□ 1.83
CPSF1-202ENST00000527827 LPPQ93052 612 aa26.51■■□□□ 1.83
CPSF1-202ENST00000527827 RIPOR3Q96MK2 946 aa26.51■■□□□ 1.83
CPSF1-202ENST00000527827 NECTIN4Q96NY8 510 aa26.51■■□□□ 1.83
CPSF1-202ENST00000527827 ZBP1Q9H171 429 aa26.51■■□□□ 1.83
CPSF1-202ENST00000527827 PCDHA4Q9UN74 947 aa26.51■■□□□ 1.83
CPSF1-202ENST00000527827 CA8P35219 290 aa26.5■■□□□ 1.83
CPSF1-202ENST00000527827 LONRF3Q496Y0 759 aa26.5■■□□□ 1.83
CPSF1-202ENST00000527827 KREMEN2Q8NCW0 462 aa26.5■■□□□ 1.83
CPSF1-202ENST00000527827 AUTS2Q8WXX7 1259 aa26.5■■□□□ 1.83
CPSF1-202ENST00000527827 MBOAT7Q96N66 472 aa26.5■■□□□ 1.83
CPSF1-202ENST00000527827 C22orf23Q9BZE7 217 aa26.5■■□□□ 1.83
CPSF1-202ENST00000527827 SUCLA2Q9P2R7 463 aaPredicted RBP26.5■■□□□ 1.83
CPSF1-202ENST00000527827 USP34Q70CQ2 3546 aa26.49■■□□□ 1.83
CPSF1-202ENST00000527827 MEIS3P2A8K0S8 358 aa26.49■■□□□ 1.83
CPSF1-202ENST00000527827 M0R2N6 131 aa26.49■■□□□ 1.83
CPSF1-202ENST00000527827 ZC3H11AO75152 810 aaKnown RBP eCLIP26.49■■□□□ 1.83
CPSF1-202ENST00000527827 MAFO75444 373 aaPredicted RBP26.49■■□□□ 1.83
CPSF1-202ENST00000527827 WEE2P0C1S8 567 aa26.49■■□□□ 1.83
CPSF1-202ENST00000527827 SFPQP23246 707 aaKnown RBP eCLIP26.49■■□□□ 1.83
CPSF1-202ENST00000527827 PSMA5P28066 241 aa26.49■■□□□ 1.83
CPSF1-202ENST00000527827 DNM2P50570 870 aa26.49■■□□□ 1.83
CPSF1-202ENST00000527827 TWF2Q6IBS0 349 aaKnown RBP26.49■■□□□ 1.83
CPSF1-202ENST00000527827 ZNF410Q86VK4 478 aa26.49■■□□□ 1.83
CPSF1-202ENST00000527827 C12orf76Q8N812 135 aaPredicted RBP26.49■■□□□ 1.83
CPSF1-202ENST00000527827 ETNPPLQ8TBG4 499 aa26.49■■□□□ 1.83
CPSF1-202ENST00000527827 BCL7CQ8WUZ0 217 aaPredicted RBP26.49■■□□□ 1.83
CPSF1-202ENST00000527827 RSPH1Q8WYR4 309 aa26.49■■□□□ 1.83
CPSF1-202ENST00000527827 NRDE2Q9H7Z3 1164 aa26.49■■□□□ 1.83
CPSF1-202ENST00000527827 FAM86C1Q9NVL1 165 aa26.49■■□□□ 1.83
CPSF1-202ENST00000527827 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP26.48■■□□□ 1.83
CPSF1-202ENST00000527827 MTHFRP42898 656 aa26.48■■□□□ 1.83
CPSF1-202ENST00000527827 TOB2Q14106 344 aaPredicted RBP26.48■■□□□ 1.83
CPSF1-202ENST00000527827 BMS1Q14692 1282 aaKnown RBP26.48■■□□□ 1.83
CPSF1-202ENST00000527827 NPY5RQ15761 445 aa26.48■■□□□ 1.83
CPSF1-202ENST00000527827 RARS2Q5T160 578 aaKnown RBP26.48■■□□□ 1.83
CPSF1-202ENST00000527827 KANK3Q6NY19 840 aa26.48■■□□□ 1.83
CPSF1-202ENST00000527827 ANO5Q75V66 913 aa26.48■■□□□ 1.83
CPSF1-202ENST00000527827 DDX53Q86TM3 631 aaKnown RBP26.48■■□□□ 1.83
CPSF1-202ENST00000527827 RHPN2Q8IUC4 686 aa26.48■■□□□ 1.83
CPSF1-202ENST00000527827 BLIDQ8IZY5 108 aa26.48■■□□□ 1.83
CPSF1-202ENST00000527827 IGSF21Q96ID5 467 aa26.48■■□□□ 1.83
CPSF1-202ENST00000527827 FAM105AQ9NUU6 356 aa26.48■■□□□ 1.83
CPSF1-202ENST00000527827 TBC1D13Q9NVG8 400 aa26.48■■□□□ 1.83
CPSF1-202ENST00000527827 SORCS3Q9UPU3 1222 aa26.48■■□□□ 1.83
CPSF1-202ENST00000527827 PIN4Q9Y237 131 aaKnown RBP26.48■■□□□ 1.83
CPSF1-202ENST00000527827 IRAK3Q9Y616 596 aa26.48■■□□□ 1.83
CPSF1-202ENST00000527827 DDX11L8A8MPP1 907 aa26.47■■□□□ 1.83
CPSF1-202ENST00000527827 BRD1O95696 1058 aa26.47■■□□□ 1.83
CPSF1-202ENST00000527827 SKIP12755 728 aa26.47■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms