RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 CLCN6P51797 869 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 STX17P56962 302 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 PURAQ00577 322 aaKnown RBP9.4□□□□□ -0.9
VAPB-206ENST00000520497 BEX3Q00994 111 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 LRRC63Q05C16 580 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 TBC1D8BQ0IIM8 1120 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 ALCAMQ13740 583 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 MTFR1Q15390 333 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 BRDTQ58F21 947 aaPredicted RBP9.4□□□□□ -0.9
VAPB-206ENST00000520497 ZNF484Q5JVG2 852 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 FAM102BQ5T8I3 360 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 CDKAL1Q5VV42 579 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 SPATA1Q5VX52 437 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 MAEAQ7L5Y9 396 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 FAM178BQ8IXR5 827 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 SLC17A8Q8NDX2 589 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 SPIRE2Q8WWL2 714 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 DUSP9Q99956 384 aaKnown RBP9.4□□□□□ -0.9
VAPB-206ENST00000520497 NTPCRQ9BSD7 190 aaKnown RBP9.4□□□□□ -0.9
VAPB-206ENST00000520497 POLR3FQ9H1D9 316 aaPredicted RBP9.4□□□□□ -0.9
VAPB-206ENST00000520497 SEMA6BQ9H3T3 888 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 NFE2L3Q9Y4A8 694 aa9.4□□□□□ -0.9
VAPB-206ENST00000520497 ADGRA3Q8IWK6 1321 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 K7ENM7 598 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 KPNA6O60684 536 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 PRPF6O94906 941 aaKnown RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 GCNT3O95395 438 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 TPM2P07951 284 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 C6orf222P0C671 652 aaPredicted RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 CDK11BP21127 795 aaKnown RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 GLRA2P23416 452 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 CNGA1P29973 690 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 HOXC8P31273 242 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 NPTX2P47972 431 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 PEX3P56589 373 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 GTF2BQ00403 316 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 SPAG1Q07617 926 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 DMP1Q13316 513 aaPredicted RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 MFSD10Q14728 455 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 KNOP1Q1ED39 458 aaKnown RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 ZC2HC1CQ53FD0 456 aaPredicted RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 MARCH8Q5T0T0 291 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 ANKRD40Q6AI12 368 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 CCSAPQ6IQ19 270 aaPredicted RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 STXBP4Q6ZWJ1 553 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 HAUS6Q7Z4H7 955 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 ZC3H3Q8IXZ2 948 aaKnown RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 TMEM161BQ8NDZ6 487 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 KLHDC9Q8NEP7 349 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 ASAP3Q8TDY4 903 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 NOC3LQ8WTT2 800 aaKnown RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 TRAPPC12Q8WVT3 735 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 TMEM143Q96AN5 459 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 HVCN1Q96D96 273 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 MRFAP1L1Q96HT8 127 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 JPH2Q9BR39 696 aaPredicted RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 KATNAL1Q9BW62 490 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 XPNPEP3Q9NQH7 507 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 SAMSN1Q9NSI8 373 aaKnown RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 FANCLQ9NW38 375 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 ARHGAP28Q9P2N2 729 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 DDX20Q9UHI6 824 aaKnown RBP9.39□□□□□ -0.91
VAPB-206ENST00000520497 TRAF3IP3Q9Y228 551 aa9.39□□□□□ -0.91
VAPB-206ENST00000520497 PDE4DIPQ5VU43 2346 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 NRCAMQ92823 1304 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 MBLAC1A4D2B0 266 aaPredicted RBP9.38□□□□□ -0.91
VAPB-206ENST00000520497 RRN3P2A6NIE6 340 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 PDXKO00764 312 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 SLC16A4O15374 487 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 MAGEB2O15479 319 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 TGFB1I1O43294 461 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 NRDCO43847 1150 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 MSCO60682 206 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 FGFR1OPO95684 399 aaKnown RBP9.38□□□□□ -0.91
VAPB-206ENST00000520497 PGK1P00558 417 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 SERPINC1P01008 464 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 MYL3P08590 195 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 ATP1A3P13637 1013 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 SCP2P22307 547 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 NAMPTP43490 491 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 PSEN2P49810 448 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 ZNF75DP51815 510 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 SMTNP53814 917 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 ADAM17P78536 824 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 KCNA1Q09470 495 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 PPFIA1Q13136 1202 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 DRP2Q13474 957 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 GRIK4Q16099 956 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 KIAA0753Q2KHM9 967 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 EDRF1Q3B7T1 1238 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 SLC9C1Q4G0N8 1177 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 FILIP1LQ4L180 1135 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 GNASQ5JWF2 1037 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 IER5Q5VY09 327 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 MTHFD1LQ6UB35 978 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 LRRC55Q6ZSA7 311 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 IRF2BP1Q8IU81 584 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 FAM114A1Q8IWE2 563 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 NELFCDQ8IXH7 590 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 LMBR1Q8WVP7 490 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms