RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PGM5Q15124 567 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 CLUL1Q15846 466 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 DALRD3Q5D0E6 543 aaKnown RBP16.15■□□□□ 0.18
NUP54-217ENST00000514987 CPXCR1Q8N123 301 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 USP38Q8NB14 1042 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 IL31RAQ8NI17 732 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 U2AF1L4Q8WU68 220 aaKnown RBP16.15■□□□□ 0.18
NUP54-217ENST00000514987 AS3MTQ9HBK9 375 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 GDF3Q9NR23 364 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 AJAP1Q9UKB5 411 aaPredicted RBP16.15■□□□□ 0.18
NUP54-217ENST00000514987 USP20Q9Y2K6 914 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 DIS3Q9Y2L1 958 aaKnown RBP16.15■□□□□ 0.18
NUP54-217ENST00000514987 NCANO14594 1321 aa16.15■□□□□ 0.18
NUP54-217ENST00000514987 KCNK3O14649 394 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 RNF40O75150 1001 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 MYBL2P10244 700 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 VAMP7P51809 220 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 KIF22Q14807 665 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 RNF207Q6ZRF8 634 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 SND1Q7KZF4 910 aaKnown RBP eCLIP16.14■□□□□ 0.17
NUP54-217ENST00000514987 KSR1Q8IVT5 923 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 XXYLT1Q8NBI6 393 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 HDAC7Q8WUI4 952 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 MS4A14Q96JA4 679 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 ZFP91Q96JP5 570 aaPredicted RBP16.14■□□□□ 0.17
NUP54-217ENST00000514987 SENP7Q9BQF6 1050 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 TMEM59LQ9UK28 342 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 ZC3H4Q9UPT8 1303 aaKnown RBP16.14■□□□□ 0.17
NUP54-217ENST00000514987 FER1L6Q2WGJ9 1857 aa16.14■□□□□ 0.17
NUP54-217ENST00000514987 CCDC188H7C350 402 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 SYF2O95926 243 aaKnown RBP16.13■□□□□ 0.17
NUP54-217ENST00000514987 VCAM1P19320 739 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 TNFAIP3P21580 790 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 LMAN1P49257 510 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 OAZ1P54368 228 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 RPS6P62753 249 aaKnown RBP16.13■□□□□ 0.17
NUP54-217ENST00000514987 CBWD6Q4V339 395 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 MUM1L1Q5H9M0 696 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 CBWD3Q5JTY5 395 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 CBWD5Q5RIA9 395 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 ZNF746Q6NUN9 644 aaPredicted RBP16.13■□□□□ 0.17
NUP54-217ENST00000514987 GJB7Q6PEY0 223 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 PEX26Q7Z412 305 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 CTNNBL1Q8WYA6 563 aaPredicted RBP16.13■□□□□ 0.17
NUP54-217ENST00000514987 TRERF1Q96PN7 1200 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 TAAR1Q96RJ0 339 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 RMDN3Q96TC7 470 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 PDCD2LQ9BRP1 358 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 SYT11Q9BT88 431 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 PXMP2Q9NR77 195 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 ERICH4A6NGS2 130 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 GOLGA8KD6RF30 607 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 PGRMC1O00264 195 aaKnown RBP16.13■□□□□ 0.17
NUP54-217ENST00000514987 EIF2AK2P19525 551 aaKnown RBP16.13■□□□□ 0.17
NUP54-217ENST00000514987 CCND2P30279 289 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 ABCD1P33897 745 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 SMTNP53814 917 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 GALCP54803 685 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 NCKAP1LP55160 1127 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 SLC7A5Q01650 507 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 ARHGEF16Q5VV41 709 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 LEKR1Q6ZMV7 388 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 OTUD6AQ7L8S5 288 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 HAUS6Q7Z4H7 955 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 NLRX1Q86UT6 975 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 AFAP1L1Q8TED9 768 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 WHAMMQ8TF30 809 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 SCFD2Q8WU76 684 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 RFFLQ8WZ73 363 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 GPRASP2Q96D09 838 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 PDGFDQ9GZP0 370 aaPredicted RBP16.13■□□□□ 0.17
NUP54-217ENST00000514987 IKZF4Q9H2S9 585 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 RPAP3Q9H6T3 665 aaPredicted RBP16.13■□□□□ 0.17
NUP54-217ENST00000514987 C17orf75Q9HAS0 396 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 SMARCAL1Q9NZC9 954 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 EHD2Q9NZN4 543 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 PKD2L1Q9P0L9 805 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 STXBP5LQ9Y2K9 1186 aa16.13■□□□□ 0.17
NUP54-217ENST00000514987 DOCK1Q14185 1865 aa16.12■□□□□ 0.17
NUP54-217ENST00000514987 HSF2BPO75031 334 aa16.12■□□□□ 0.17
NUP54-217ENST00000514987 RPS6KA5O75582 802 aa16.12■□□□□ 0.17
NUP54-217ENST00000514987 HEXIM1O94992 359 aaKnown RBP16.12■□□□□ 0.17
NUP54-217ENST00000514987 TRIM49P0CI25 452 aa16.12■□□□□ 0.17
NUP54-217ENST00000514987 TRIM49CP0CI26 452 aa16.12■□□□□ 0.17
NUP54-217ENST00000514987 ENPEPQ07075 957 aa16.12■□□□□ 0.17
NUP54-217ENST00000514987 RASGEF1CQ8N431 466 aa16.12■□□□□ 0.17
NUP54-217ENST00000514987 MREGQ8N565 214 aa16.12■□□□□ 0.17
NUP54-217ENST00000514987 LMO3Q8TAP4 145 aa16.12■□□□□ 0.17
NUP54-217ENST00000514987 LNX1Q8TBB1 728 aaPredicted RBP16.12■□□□□ 0.17
NUP54-217ENST00000514987 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.12■□□□□ 0.173e-9■□□□□ 10
NUP54-217ENST00000514987 FAM204AQ9H8W3 233 aa16.12■□□□□ 0.17
NUP54-217ENST00000514987 CWC15Q9P013 229 aaKnown RBP16.12■□□□□ 0.17
NUP54-217ENST00000514987 AMFRQ9UKV5 643 aa16.12■□□□□ 0.17
NUP54-217ENST00000514987 ASTN2O75129 1339 aaPredicted RBP16.12■□□□□ 0.17
NUP54-217ENST00000514987 VWA5AO00534 786 aa16.11■□□□□ 0.17
NUP54-217ENST00000514987 CEP104O60308 925 aa16.11■□□□□ 0.17
NUP54-217ENST00000514987 MYCLP12524 364 aaPredicted RBP16.11■□□□□ 0.17
NUP54-217ENST00000514987 ACTN2P35609 894 aa16.11■□□□□ 0.17
NUP54-217ENST00000514987 GGCXP38435 758 aa16.11■□□□□ 0.17
NUP54-217ENST00000514987 GYS2P54840 703 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms