RNA–Protein interactions for RNA: ENST00000514110.5

SNHG4-208, Transcript of small nucleolar RNA host gene 4, human

TSL 1 (best)

Gene SNHG4, Length 679 nt, Biotype retained intron, Subcellular localisation Nucleoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG4-208	ENST00000514110	CPLX2	Q6PUV4	134 aa	Known RBP	13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	HFE2	Q6ZVN8	426 aa		13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	FAM177A1	Q8N128	213 aa	Predicted RBP	13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	CDCA3	Q99618	268 aa	Predicted RBP	13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	TCF25	Q9BQ70	676 aa		13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	FDXACB1	Q9BRP7	624 aa	Predicted RBP	13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	PHF20	Q9BVI0	1012 aa		13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	GCOM2	Q9BZD3	368 aa	Predicted RBP	13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	ENTPD7	Q9NQZ7	604 aa		13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	GJB4	Q9NTQ9	266 aa		13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	SPG21	Q9NZD8	308 aa		13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	PUF60	Q9UHX1	559 aa	Known RBP	13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	VAV3	Q9UKW4	847 aa		13.72	□□□□□ -0.21
SNHG4-208	ENST00000514110	PPM1A	P35813	382 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	DNM2	P50570	870 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	PSMC5	P62195	406 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	CDC42EP1	Q00587	391 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	PPP2R5C	Q13362	524 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	CBX2	Q14781	532 aa	Predicted RBP	13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	PLA2G4F	Q68DD2	849 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	LLGL2	Q6P1M3	1020 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	TMEM184A	Q6ZMB5	413 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	RHPN2	Q8IUC4	686 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	KSR1	Q8IVT5	923 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	SLC39A11	Q8N1S5	342 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	ZNF579	Q8NAF0	562 aa	Known RBP	13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	OXER1	Q8TDS5	423 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	SUSD6	Q92537	303 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	LPP	Q93052	612 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	S1PR5	Q9H228	398 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	KCNMB3	Q9NPA1	279 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	NGRN	Q9NPE2	291 aa	Known RBP	13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	DACT1	Q9NYF0	836 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	SUCLA2	Q9P2R7	463 aa	Predicted RBP	13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	TPCN1	Q9ULQ1	816 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	WDFY4	Q6ZS81	3184 aa		13.71	□□□□□ -0.21
SNHG4-208	ENST00000514110	CCDC194	A0A1B0GVG4	234 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	FSD2	A1L4K1	749 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	NT5C1B-RDH14	C9J2C7	533 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	TEC	P42680	631 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	PHKA2	P46019	1235 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	NPEPPS	P55786	919 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	KRT17	Q04695	432 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	LONRF3	Q496Y0	759 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	ANKRD54	Q6NXT1	300 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	TMC7	Q7Z402	723 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	NEK8	Q86SG6	692 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	ZNF410	Q86VK4	478 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	EDA	Q92838	391 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	RPGRIP1	Q96KN7	1286 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	TRAIP	Q9BWF2	469 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	APOL5	Q9BWW9	433 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	PHF7	Q9BWX1	381 aa	Predicted RBP	13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	SLK	Q9H2G2	1235 aa	Predicted RBP	13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	CHST12	Q9NRB3	414 aa		13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	WRAP73	Q9P2S5	460 aa	Predicted RBP	13.7	□□□□□ -0.22
SNHG4-208	ENST00000514110	STK36	Q9NRP7	1315 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	MEIS3P2	A8K0S8	358 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	CCNT1	O60563	726 aa	Known RBP	13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	PFKFB2	O60825	505 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	CDKL5	O76039	1030 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	CTDNEP1	O95476	244 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	SFPQ	P23246	707 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	QARS	P47897	775 aa	Known RBP	13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	BCAR1	P56945	870 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	EARS2	Q5JPH6	523 aa	Known RBP	13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	TWF2	Q6IBS0	349 aa	Known RBP	13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	PPP4R3A	Q6IN85	833 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	SYCE2	Q6PIF2	218 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	PIK3AP1	Q6ZUJ8	805 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	TMEM173	Q86WV6	379 aa	Predicted RBP	13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	HAS1	Q92839	578 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	FAM20A	Q96MK3	541 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	NLRP4	Q96MN2	994 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	MRPL9	Q9BYD2	267 aa	Known RBP	13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	IFT122	Q9HBG6	1241 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	CYP26B1	Q9NR63	512 aa		13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	PIN4	Q9Y237	131 aa	Known RBP	13.69	□□□□□ -0.22
SNHG4-208	ENST00000514110	FAM205C	A6NFA0	338 aa		13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	C2orf71	A6NGG8	1288 aa		13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	P4HB	P07237	508 aa	Known RBP	13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	ALDH7A1	P49419	539 aa	Known RBP	13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	SMC1A	Q14683	1233 aa	Known RBP	13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	CATSPER4	Q7RTX7	472 aa		13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	POTED	Q86YR6	584 aa		13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	MRPL43	Q8N983	215 aa	Known RBP	13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	FBXL18	Q96ME1	805 aa		13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	JPH2	Q9BR39	696 aa	Predicted RBP	13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	INO80B	Q9C086	356 aa	Predicted RBP	13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	FAM105A	Q9NUU6	356 aa		13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	CDH22	Q9UJ99	828 aa		13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	COL4A3BP	Q9Y5P4	624 aa		13.68	□□□□□ -0.22
SNHG4-208	ENST00000514110	ZBTB39	O15060	712 aa		13.67	□□□□□ -0.22
SNHG4-208	ENST00000514110	ZC3H11A	O75152	810 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
SNHG4-208	ENST00000514110	SRGAP2B	P0DMP2	458 aa		13.67	□□□□□ -0.22
SNHG4-208	ENST00000514110	GCFC2	P16383	781 aa	Known RBP	13.67	□□□□□ -0.22
SNHG4-208	ENST00000514110	ZXDA	P98168	799 aa		13.67	□□□□□ -0.22
SNHG4-208	ENST00000514110	TRIM67	Q6ZTA4	783 aa		13.67	□□□□□ -0.22
SNHG4-208	ENST00000514110	BCL7C	Q8WUZ0	217 aa	Predicted RBP	13.67	□□□□□ -0.22
SNHG4-208	ENST00000514110	PRPF31	Q8WWY3	499 aa	Known RBP	13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 22 ms