RNA–Protein interactions for RNA: ENST00000513678.5

MATR3-222, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 444 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-222	ENST00000513678	SMAD4	Q13485	552 aa	Known RBP	18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	TRIM29	Q14134	588 aa		18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	EPHA7	Q15375	998 aa		18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	CLLU1OS	Q5K130	101 aa		18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	SPOUT1	Q5T280	376 aa	Known RBP	18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	PLA2G4F	Q68DD2	849 aa		18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	POTED	Q86YR6	584 aa		18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	DIS3L2	Q8IYB7	885 aa	Known RBP	18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	ZSCAN31	Q96LW9	406 aa	Predicted RBP	18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	JPH2	Q9BR39	696 aa	Predicted RBP	18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	TRAIP	Q9BWF2	469 aa		18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	GCOM2	Q9BZD3	368 aa	Predicted RBP	18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	IGFLR1	Q9H665	355 aa		18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	CYP26B1	Q9NR63	512 aa		18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	TLR9	Q9NR96	1032 aa		18.84	■□□□□ 0.61
MATR3-222	ENST00000513678	LZTS1	Q9Y250	596 aa		18.84	■□□□□ 0.61
MATR3-222	ENST00000513678		A0A087WZ62	844 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	BTBD18	B2RXH4	712 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	FSCN2	O14926	492 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	CSDE1	O75534	798 aa	Known RBP	18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	BAG4	O95429	457 aa	Known RBP	18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	EYA4	O95677	639 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	GLP2R	O95838	553 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	EOMES	O95936	686 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	RBM25	P49756	843 aa	Known RBP	18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	DNM2	P50570	870 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	ADHFE1	Q8IWW8	467 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	C4orf19	Q8IY42	314 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	EXOC8	Q8IYI6	725 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	FDXACB1	Q9BRP7	624 aa	Predicted RBP	18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	LRFN3	Q9BTN0	628 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	CHST12	Q9NRB3	414 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	SH2B1	Q9NRF2	756 aa	Predicted RBP	18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	DACT1	Q9NYF0	836 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	CLEC1B	Q9P126	229 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	SUCLA2	Q9P2R7	463 aa	Predicted RBP	18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	RAPGEFL1	Q9UHV5	662 aa		18.83	■□□□□ 0.6
MATR3-222	ENST00000513678	GPR37L1	O60883	481 aa		18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	SFPQ	P23246	707 aa	Known RBP eCLIP	18.82	■□□□□ 0.6	2e-6	■■□□□ 12.5
MATR3-222	ENST00000513678	SSTR3	P32745	418 aa	Predicted RBP	18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	NRIP1	P48552	1158 aa		18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	ERVFC1	P60507	584 aa		18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	PLCB3	Q01970	1234 aa		18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	CLUL1	Q15846	466 aa		18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	TMEM31	Q5JXX7	168 aa		18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	THNSL1	Q8IYQ7	743 aa		18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	SMRP1	Q8NCR6	262 aa		18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	LXN	Q9BS40	222 aa		18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	DHX33	Q9H6R0	707 aa	Known RBP	18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	CD207	Q9UJ71	328 aa		18.82	■□□□□ 0.6
MATR3-222	ENST00000513678	TRIO	O75962	3097 aa		18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	PPM1A	P35813	382 aa		18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	NDUFV1	P49821	464 aa		18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	NPEPPS	P55786	919 aa		18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	COASY	Q13057	564 aa		18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	PDE12	Q6L8Q7	609 aa	Known RBP	18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	KCNT2	Q6UVM3	1135 aa		18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	RHPN2	Q8IUC4	686 aa		18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	ABI1	Q8IZP0	508 aa		18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	ZNF579	Q8NAF0	562 aa	Known RBP	18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	MRPS27	Q92552	414 aa	Known RBP	18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	IFT122	Q9HBG6	1241 aa		18.81	■□□□□ 0.6
MATR3-222	ENST00000513678	MARCH6	O60337	910 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	LYPLA2	O95372	231 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	PHKA2	P46019	1235 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	HMGN5	P82970	282 aa	Known RBP	18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	SAFB	Q15424	915 aa	Known RBP eCLIP	18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	DUSP6	Q16828	381 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	RBM23	Q86U06	439 aa	Known RBP	18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	KSR1	Q8IVT5	923 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	SLC7A3	Q8WY07	619 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	RSPH1	Q8WYR4	309 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	CEP170P1	Q96L14	293 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	ZNF558	Q96NG5	402 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	CDCA3	Q99618	268 aa	Predicted RBP	18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	INO80B	Q9C086	356 aa	Predicted RBP	18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	ZSWIM4	Q9H7M6	989 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	TLE6	Q9H808	572 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	COL4A3BP	Q9Y5P4	624 aa		18.8	■□□□□ 0.6
MATR3-222	ENST00000513678	FSD2	A1L4K1	749 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	GAS2	O43903	313 aa	Known RBP	18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	YWHAB	P31946	246 aa	Known RBP	18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	PBX3	P40426	434 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	RFC5	P40937	340 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	ORC2	Q13416	577 aa	Predicted RBP	18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	CALCRL	Q16602	461 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	CCDC83	Q8IWF9	413 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	SLC39A11	Q8N1S5	342 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	RNF169	Q8NCN4	708 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	VN1R2	Q8NFZ6	395 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	HELQ	Q8TDG4	1101 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	NLRP4	Q96MN2	994 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	MTMR9	Q96QG7	549 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	POP1	Q99575	1024 aa	Known RBP	18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	HSD17B14	Q9BPX1	270 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	MRPL9	Q9BYD2	267 aa	Known RBP	18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	RGL1	Q9NZL6	768 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	BARX2	Q9UMQ3	279 aa	Predicted RBP	18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	PCDHA12	Q9UN75	941 aa		18.79	■□□□□ 0.6
MATR3-222	ENST00000513678	PIN4	Q9Y237	131 aa	Known RBP	18.79	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms