RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 COG1Q8WTW3 980 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 TEKT3Q9BXF9 490 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 RNF186Q9NXI6 227 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 SLC5A4Q9NY91 659 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 ZNFX1Q9P2E3 1918 aaKnown RBP17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 ATP9AO75110 1047 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 KCNMA1Q12791 1236 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 ITGB3BPQ13352 177 aaPredicted RBP17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 LRRC41Q15345 812 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 SLC9C1Q4G0N8 1177 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 HAUS3Q68CZ6 603 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 CCNI2Q6ZMN8 369 aaPredicted RBP17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 MORC4Q8TE76 937 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 NOX5Q96PH1 765 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 RNF14Q9UBS8 474 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 HPCAL4Q9UM19 191 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 DIS3Q9Y2L1 958 aaKnown RBP17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 FAN1Q9Y2M0 1017 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 SPATA31C2B4DYI2 1134 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 DDX39AO00148 427 aaKnown RBP17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 CHMP2AO43633 222 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 RPS6KA5O75582 802 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 LMAN1P49257 510 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 LACTBP83111 547 aaPredicted RBP17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 MAP2K5Q13163 448 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 PPP2R5CQ13362 524 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 SFMBT2Q5VUG0 894 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 HGSNATQ68CP4 663 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 ARMCX2Q7L311 632 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 ZNF467Q7Z7K2 595 aaPredicted RBP17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 GLIS3Q8NEA6 775 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 OSBPL9Q96SU4 736 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 CFHR5Q9BXR6 569 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 MLXIPQ9HAP2 919 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 TBC1D22BQ9NU19 505 aa17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 CWC15Q9P013 229 aaKnown RBP17.54■□□□□ 0.4
SQSTM1-213ENST00000510187 ZNF185O15231 689 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 DHX15O43143 795 aaKnown RBP17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 N4BP1O75113 896 aaKnown RBP17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 MOCS3O95396 460 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 CYP11B2P19099 503 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 CTGFP29279 349 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 ICAM3P32942 547 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 TNNT3P45378 269 aaPredicted RBP17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 FCGRTP55899 365 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 GPBP1Q86WP2 473 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 ERMNQ8TAM6 284 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 NPLOC4Q8TAT6 608 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 MAML3Q96JK9 1138 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 KCTD10Q9H3F6 313 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 UNC45AQ9H3U1 944 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 KIAA1024Q9UPX6 916 aa17.53■□□□□ 0.4
SQSTM1-213ENST00000510187 NOL4O94818 638 aa17.52■□□□□ 0.4
SQSTM1-213ENST00000510187 HSPA6P17066 643 aa17.52■□□□□ 0.4
SQSTM1-213ENST00000510187 TNFRSF8P28908 595 aa17.52■□□□□ 0.4
SQSTM1-213ENST00000510187 ACTN2P35609 894 aa17.52■□□□□ 0.4
SQSTM1-213ENST00000510187 PSMC4P43686 418 aa17.52■□□□□ 0.4
SQSTM1-213ENST00000510187 ZSCAN26Q16670 478 aa17.52■□□□□ 0.4
SQSTM1-213ENST00000510187 SOCS4Q8WXH5 440 aa17.52■□□□□ 0.4
SQSTM1-213ENST00000510187 LSM14BQ9BX40 385 aaKnown RBP17.52■□□□□ 0.4
SQSTM1-213ENST00000510187 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.52■□□□□ 0.4
SQSTM1-213ENST00000510187 PCNTO95613 3336 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 E9PMD0 336 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 EML1O00423 815 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 SSBP05455 408 aaKnown RBP eCLIP17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 KCNA2P16389 499 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 GYS2P54840 703 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 SLC12A3P55017 1021 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 SP3Q02447 781 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 C2orf54Q08AI8 447 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 GLE1Q53GS7 698 aaKnown RBP17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 MAMDC4Q6UXC1 1216 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 FBXO16Q8IX29 292 aaPredicted RBP17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 KCTD17Q8N5Z5 321 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 SPATA4Q8NEY3 305 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 AENQ8WTP8 325 aaKnown RBP17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 SCFD1Q8WVM8 642 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 ARHGAP39Q9C0H5 1083 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 RNF216Q9NWF9 866 aaPredicted RBP17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 TCEAL9Q9UHQ7 104 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 ZNF236Q9UL36 1845 aa17.52■□□□□ 0.39
SQSTM1-213ENST00000510187 POTEB3A0JP26 581 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 HOXC6P09630 235 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 RGS2P41220 211 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 PAFAH1B1P43034 410 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 TDRD12Q587J7 1177 aaKnown RBP17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 HERC4Q5GLZ8 1057 aaPredicted RBP17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 POTEBQ6S5H4 581 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 B3GNT9Q6UX72 402 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 LEKR1Q6ZMV7 388 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 GOLGA6L1Q8N7Z2 621 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 USP6NLQ92738 828 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 CRACR2AQ9BSW2 395 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 SELENOOQ9BVL4 669 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 AIPL1Q9NZN9 384 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 GJD2Q9UKL4 321 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 PLXNA1Q9UIW2 1896 aa17.51■□□□□ 0.39
SQSTM1-213ENST00000510187 ATP8B3O60423 1300 aa17.5■□□□□ 0.39
SQSTM1-213ENST00000510187 A0A0U1RQG5 324 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-213ENST00000510187 CETN3O15182 167 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms