RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 HNRNPH1P31943 449 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 RBM5P52756 815 aaKnown RBP eCLIP3.81□□□□□ -1.8
USP53-205ENST00000509769 RAB2AP61019 212 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 DSG1Q02413 1049 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 MTA1Q13330 715 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 SLC12A1Q13621 1099 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 IDI1Q13907 227 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PPP4R3CPQ6ZMV5 832 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 NCOA7Q8NI08 942 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PPP1R14AQ96A00 147 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 TUBA1CQ9BQE3 449 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 TCEAL7Q9BRU2 100 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 MYL10Q9BUA6 226 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PANK2Q9BZ23 570 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 GCOM2Q9BZD3 368 aaPredicted RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 PLEKHA4Q9H4M7 779 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 DCLRE1BQ9H816 532 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ZBTB40Q9NUA8 1239 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ZFP69BQ9UJL9 534 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 TTC7AQ9ULT0 858 aaPredicted RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 ING4Q9UNL4 249 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ZBTB1Q9Y2K1 713 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 AP3M1Q9Y2T2 418 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ZFYVE9O95405 1425 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 CDC42BPGQ6DT37 1551 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 TMEM247A6NEH6 219 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 SMCO2A6NFE2 343 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 FAM187AA6NFU0 413 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 SAGE2PA6NJ88 616 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 BIN1O00499 593 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 DLL1O00548 723 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PEX1O43933 1283 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 SNX2O60749 519 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 AGTP01019 485 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 RPN1P04843 607 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 SRGAP2BP0DMP2 458 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PABPC1P11940 636 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 UQCRBP14927 111 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ERP29P30040 261 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 PPP2R1AP30153 589 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 SKIV2L2P42285 1042 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 AARSP49588 968 aaKnown RBP eCLIP3.81□□□□□ -1.8
USP53-205ENST00000509769 SARSP49591 514 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 OTUD4Q01804 1114 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 HIC1Q14526 733 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 KARSQ15046 597 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 TBRG1Q3YBR2 411 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 TIMM50Q3ZCQ8 353 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PDCD4Q53EL6 469 aaKnown RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 SFMBT2Q5VUG0 894 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 B3GNT6Q6ZMB0 384 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PLEKHM3Q6ZWE6 761 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 STRA8Q7Z7C7 330 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ZNF654Q8IZM8 581 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ANKRD7Q92527 254 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 HSPH1Q92598 858 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 OTUB1Q96FW1 271 aaPredicted RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 LZTS2Q9BRK4 669 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 NACA2Q9H009 215 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 BRD9Q9H8M2 597 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ZNF277Q9NRM2 450 aaPredicted RBP3.81□□□□□ -1.8
USP53-205ENST00000509769 SUN2Q9UH99 717 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 PFDN2Q9UHV9 154 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 MKLN1Q9UL63 735 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ASAP1Q9ULH1 1129 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 POLIQ9UNA4 740 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 ANKRD6Q9Y2G4 727 aa3.81□□□□□ -1.8
USP53-205ENST00000509769 MYOM3Q5VTT5 1437 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 MYOM1P52179 1685 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 PDZK1P1A8MUH7 402 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 C2orf74A8MZ97 194 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 CAND2O75155 1236 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 INHBAP08476 426 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 XRCC5P13010 732 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 ATP5JP18859 108 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 MARK3P27448 753 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 PRIM2P49643 509 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 MXI1P50539 228 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 GJA9P57773 515 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 DDR1Q08345 913 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 ADCY1Q08828 1119 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 DGUOKQ16854 277 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 PREPLQ4J6C6 727 aaPredicted RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 PARP10Q53GL7 1025 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 C1orf146Q5VVC0 180 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 BICRALQ6AI39 1079 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 SDE2Q6IQ49 451 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 DNAJC5GQ8N7S2 189 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 TOR1AIP2Q8NFQ8 470 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 NSMCE1Q8WV22 266 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 SCFD1Q8WVM8 642 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 HAVCR1Q96D42 359 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 TNIP3Q96KP6 325 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 NEDD4LQ96PU5 975 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 CDC5LQ99459 802 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 MRPL39Q9NYK5 338 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 TSPYL4Q9UJ04 414 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 STX8Q9UNK0 236 aa3.8□□□□□ -1.8
USP53-205ENST00000509769 HBS1LQ9Y450 684 aaKnown RBP3.8□□□□□ -1.8
USP53-205ENST00000509769 SYNRGQ9UMZ2 1314 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms