RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 DNAJC19Q96DA6 116 aa32.78■■■□□ 2.84
LIMCH1-211ENST00000509638 CDHR5Q9HBB8 845 aa32.78■■■□□ 2.84
LIMCH1-211ENST00000509638 CASP1P29466 404 aa32.77■■■□□ 2.84
LIMCH1-211ENST00000509638 ZNF410Q86VK4 478 aa32.77■■■□□ 2.84
LIMCH1-211ENST00000509638 ZNF710Q8N1W2 664 aa32.77■■■□□ 2.84
LIMCH1-211ENST00000509638 RNF149Q8NC42 400 aa32.77■■■□□ 2.84
LIMCH1-211ENST00000509638 DACT1Q9NYF0 836 aa32.77■■■□□ 2.84
LIMCH1-211ENST00000509638 A0A087WZ62 844 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 SFI1A8K8P3 1242 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 RBAK-RBAKDNI3L0D1 243 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 ASAP2O43150 1006 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 FAM13AO94988 1023 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 MCM4P33991 863 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 CDC42EP1Q00587 391 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 TFDP1Q14186 410 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 MFSD5Q6N075 450 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 TET1Q8NFU7 2136 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 IFT74Q96LB3 600 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 FDXACB1Q9BRP7 624 aaPredicted RBP32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 BLZF1Q9H2G9 400 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 ZHX3Q9H4I2 956 aa32.76■■■□□ 2.84
LIMCH1-211ENST00000509638 LRRIQ4A6NIV6 560 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 CRYBB1P53674 252 aaPredicted RBP32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 ASIC1P78348 528 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 DMP1Q13316 513 aaPredicted RBP32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 PPP2R5AQ15172 486 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 TMEM40Q8WWA1 233 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 C7orf25Q9BPX7 421 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 PARVGQ9HBI0 331 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 GHRP10912 638 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 NAMPTP43490 491 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 ZNF131P52739 623 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 PEX3P56589 373 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 CUL4BQ13620 913 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 CCDC34Q96HJ3 373 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 OSBPL7Q9BZF2 842 aa32.75■■■□□ 2.83
LIMCH1-211ENST00000509638 PLS3P13797 630 aa32.74■■■□□ 2.83
LIMCH1-211ENST00000509638 IDEP14735 1019 aa32.74■■■□□ 2.83
LIMCH1-211ENST00000509638 FBXO47Q5MNV8 452 aa32.74■■■□□ 2.83
LIMCH1-211ENST00000509638 CNNM4Q6P4Q7 775 aa32.74■■■□□ 2.83
LIMCH1-211ENST00000509638 TMEM199Q8N511 208 aa32.74■■■□□ 2.83
LIMCH1-211ENST00000509638 BADQ92934 168 aa32.74■■■□□ 2.83
LIMCH1-211ENST00000509638 TIGD1Q96MW7 591 aa32.74■■■□□ 2.83
LIMCH1-211ENST00000509638 KIFC3Q9BVG8 833 aa32.74■■■□□ 2.83
LIMCH1-211ENST00000509638 C17orf75Q9HAS0 396 aa32.74■■■□□ 2.83
LIMCH1-211ENST00000509638 IFT122Q9HBG6 1241 aa32.74■■■□□ 2.83
LIMCH1-211ENST00000509638 NBNO60934 754 aa32.73■■■□□ 2.83
LIMCH1-211ENST00000509638 PRR29P0C7W0 189 aa32.73■■■□□ 2.83
LIMCH1-211ENST00000509638 CSF2RAP15509 400 aa32.73■■■□□ 2.83
LIMCH1-211ENST00000509638 PHKA2P46019 1235 aa32.73■■■□□ 2.83
LIMCH1-211ENST00000509638 MLLT1Q03111 559 aaPredicted RBP32.73■■■□□ 2.83
LIMCH1-211ENST00000509638 KANK3Q6NY19 840 aa32.73■■■□□ 2.83
LIMCH1-211ENST00000509638 GCOM2Q9BZD3 368 aaPredicted RBP32.73■■■□□ 2.83
LIMCH1-211ENST00000509638 LARSQ9P2J5 1176 aaKnown RBP32.73■■■□□ 2.83
LIMCH1-211ENST00000509638 ADGRA3Q8IWK6 1321 aa32.72■■■□□ 2.83
LIMCH1-211ENST00000509638 PARNO95453 639 aaKnown RBP32.72■■■□□ 2.83
LIMCH1-211ENST00000509638 DARSP14868 501 aaKnown RBP32.72■■■□□ 2.83
LIMCH1-211ENST00000509638 NPTX2P47972 431 aa32.72■■■□□ 2.83
LIMCH1-211ENST00000509638 LPIN1Q14693 890 aa32.72■■■□□ 2.83
LIMCH1-211ENST00000509638 ODR4Q5SWX8 454 aa32.72■■■□□ 2.83
LIMCH1-211ENST00000509638 MYCT1Q8N699 235 aa32.72■■■□□ 2.83
LIMCH1-211ENST00000509638 FRMD3A2A2Y4 597 aa32.71■■■□□ 2.83
LIMCH1-211ENST00000509638 GTPBP6O43824 516 aaPredicted RBP32.71■■■□□ 2.83
LIMCH1-211ENST00000509638 MYL1P05976 194 aa32.71■■■□□ 2.83
LIMCH1-211ENST00000509638 EIF4BP23588 611 aaKnown RBP32.71■■■□□ 2.83
LIMCH1-211ENST00000509638 RFC2P35250 354 aa32.71■■■□□ 2.83
LIMCH1-211ENST00000509638 GPNMBQ14956 572 aa32.71■■■□□ 2.83
LIMCH1-211ENST00000509638 POSTNQ15063 836 aa32.71■■■□□ 2.83
LIMCH1-211ENST00000509638 DEPTORQ8TB45 409 aa32.71■■■□□ 2.83
LIMCH1-211ENST00000509638 CCDC169A6NNP5 214 aa32.7■■■□□ 2.83
LIMCH1-211ENST00000509638 CSDE1O75534 798 aaKnown RBP32.7■■■□□ 2.83
LIMCH1-211ENST00000509638 PTENP60484 403 aa32.7■■■□□ 2.83
LIMCH1-211ENST00000509638 CDCA2Q69YH5 1023 aaPredicted RBP32.7■■■□□ 2.83
LIMCH1-211ENST00000509638 TSHZ1Q6ZSZ6 1077 aa32.7■■■□□ 2.83
LIMCH1-211ENST00000509638 DEFB128Q7Z7B8 93 aa32.7■■■□□ 2.83
LIMCH1-211ENST00000509638 SFR1Q86XK3 245 aa32.7■■■□□ 2.83
LIMCH1-211ENST00000509638 CCDC65Q8IXS2 484 aa32.7■■■□□ 2.83
LIMCH1-211ENST00000509638 LBHD1Q9BQE6 289 aaPredicted RBP32.7■■■□□ 2.83
LIMCH1-211ENST00000509638 PANK4Q9NVE7 773 aa32.7■■■□□ 2.83
LIMCH1-211ENST00000509638 FPGSQ05932 587 aa32.7■■■□□ 2.82
LIMCH1-211ENST00000509638 POU5F1BQ06416 359 aa32.7■■■□□ 2.82
LIMCH1-211ENST00000509638 GPT2Q8TD30 523 aa32.7■■■□□ 2.82
LIMCH1-211ENST00000509638 NFKBIZQ9BYH8 718 aa32.7■■■□□ 2.82
LIMCH1-211ENST00000509638 MINDY3Q9H8M7 445 aa32.7■■■□□ 2.82
LIMCH1-211ENST00000509638 AGO3Q9H9G7 860 aaKnown RBP32.7■■■□□ 2.82
LIMCH1-211ENST00000509638 KMT5AQ9NQR1 393 aa32.7■■■□□ 2.82
LIMCH1-211ENST00000509638 NOC2LQ9Y3T9 749 aaKnown RBP32.7■■■□□ 2.82
LIMCH1-211ENST00000509638 RANBP2P49792 3224 aaKnown RBP32.69■■■□□ 2.82
LIMCH1-211ENST00000509638 GAP43P17677 238 aa32.69■■■□□ 2.82
LIMCH1-211ENST00000509638 MDM2Q00987 491 aaPredicted RBP32.69■■■□□ 2.82
LIMCH1-211ENST00000509638 COASYQ13057 564 aa32.69■■■□□ 2.82
LIMCH1-211ENST00000509638 ZBTB8OSQ8IWT0 167 aa32.69■■■□□ 2.82
LIMCH1-211ENST00000509638 SPIRE2Q8WWL2 714 aa32.69■■■□□ 2.82
LIMCH1-211ENST00000509638 RPS6KA5O75582 802 aa32.68■■■□□ 2.82
LIMCH1-211ENST00000509638 CD52P31358 61 aa32.68■■■□□ 2.82
LIMCH1-211ENST00000509638 PNOCQ13519 176 aa32.68■■■□□ 2.82
LIMCH1-211ENST00000509638 UNC13DQ70J99 1090 aa32.68■■■□□ 2.82
LIMCH1-211ENST00000509638 SRGAP1Q7Z6B7 1085 aa32.68■■■□□ 2.82
LIMCH1-211ENST00000509638 FAM228AQ86W67 206 aa32.68■■■□□ 2.82
LIMCH1-211ENST00000509638 IFNLR1Q8IU57 520 aaPredicted RBP32.68■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms