RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 TTC12Q9H892 705 aaPredicted RBP20.07■□□□□ 0.8
TPM3-220ENST00000509601 CHST12Q9NRB3 414 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 PPME1Q9Y570 386 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 ATG2AQ2TAZ0 1938 aa20.07■□□□□ 0.8
TPM3-220ENST00000509601 LYPLA2O95372 231 aa20.06■□□□□ 0.8
TPM3-220ENST00000509601 EOMESO95936 686 aa20.06■□□□□ 0.8
TPM3-220ENST00000509601 ATF7P17544 494 aaPredicted RBP20.06■□□□□ 0.8
TPM3-220ENST00000509601 GTF2F1P35269 517 aaKnown RBP eCLIP20.06■□□□□ 0.8
TPM3-220ENST00000509601 OTUD6AQ7L8S5 288 aa20.06■□□□□ 0.8
TPM3-220ENST00000509601 PRPF31Q8WWY3 499 aaKnown RBP20.06■□□□□ 0.8
TPM3-220ENST00000509601 TMEM143Q96AN5 459 aa20.06■□□□□ 0.8
TPM3-220ENST00000509601 C8orf76Q96K31 380 aa20.06■□□□□ 0.8
TPM3-220ENST00000509601 H3BQ06 376 aaPredicted RBP20.05■□□□□ 0.8
TPM3-220ENST00000509601 NEMFO60524 1076 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 ATP2B1P20020 1258 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 RFC5P40937 340 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 XKR9Q5GH70 373 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 CLLU1OSQ5K130 101 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 SPOUT1Q5T280 376 aaKnown RBP20.05■□□□□ 0.8
TPM3-220ENST00000509601 EXOC8Q8IYI6 725 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 COLGALT1Q8NBJ5 622 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 FBXO18Q8NFZ0 1043 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 SLC7A3Q8WY07 619 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 TRAIPQ9BWF2 469 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 INO80BQ9C086 356 aaPredicted RBP20.05■□□□□ 0.8
TPM3-220ENST00000509601 SH2B1Q9NRF2 756 aaPredicted RBP20.05■□□□□ 0.8
TPM3-220ENST00000509601 PCDHB12Q9Y5F1 795 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 COL4A3BPQ9Y5P4 624 aa20.05■□□□□ 0.8
TPM3-220ENST00000509601 A0A087WWV3 80 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 GRXCR2A6NFK2 248 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 HOXA2O43364 376 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 NCK2O43639 380 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 CSPG5O95196 566 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 IL9P15248 144 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 POLGP54098 1239 aaPredicted RBP20.04■□□□□ 0.8
TPM3-220ENST00000509601 DLX2Q07687 328 aaPredicted RBP20.04■□□□□ 0.8
TPM3-220ENST00000509601 SAFBQ15424 915 aaKnown RBP eCLIP20.04■□□□□ 0.8
TPM3-220ENST00000509601 ADGRD2Q7Z7M1 963 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 NLRP4Q96MN2 994 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 FOXP1Q9H334 677 aaPredicted RBP20.04■□□□□ 0.8
TPM3-220ENST00000509601 IGFLR1Q9H665 355 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 CD320Q9NPF0 282 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 XPNPEP1Q9NQW7 623 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 AAASQ9NRG9 546 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 BMP2KQ9NSY1 1161 aaPredicted RBP20.04■□□□□ 0.8
TPM3-220ENST00000509601 CLDND1Q9NY35 253 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 DACT1Q9NYF0 836 aa20.04■□□□□ 0.8
TPM3-220ENST00000509601 FGF18O76093 207 aa20.03■□□□□ 0.8
TPM3-220ENST00000509601 SFPQP23246 707 aaKnown RBP eCLIP20.03■□□□□ 0.8
TPM3-220ENST00000509601 PHKA2P46019 1235 aa20.03■□□□□ 0.8
TPM3-220ENST00000509601 ERVFC1P60507 584 aa20.03■□□□□ 0.8
TPM3-220ENST00000509601 HMGN5P82970 282 aaKnown RBP20.03■□□□□ 0.8
TPM3-220ENST00000509601 LAMTOR4Q0VGL1 99 aa20.03■□□□□ 0.8
TPM3-220ENST00000509601 ADAM15Q13444 863 aa20.03■□□□□ 0.8
TPM3-220ENST00000509601 PTCRAQ6ISU1 281 aaPredicted RBP20.03■□□□□ 0.8
TPM3-220ENST00000509601 MINDY3Q9H8M7 445 aa20.03■□□□□ 0.8
TPM3-220ENST00000509601 PCDHGC5Q9Y5F6 944 aa20.03■□□□□ 0.8
TPM3-220ENST00000509601 LINC01565O15544 149 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 ASAP2O43150 1006 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 ZNF623O75123 536 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 SRGAP2CP0DJJ0 459 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 SPATA31C1P0DKV0 1188 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 MCM7P33993 719 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 UBE3AQ05086 875 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 EMC2Q15006 297 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 ZNF174Q15697 407 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 EP400NLQ6ZTU2 488 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 CATSPER4Q7RTX7 472 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 SRGAP1Q7Z6B7 1085 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 FERMT3Q86UX7 667 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 FAM178BQ8IXR5 827 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 RNF169Q8NCN4 708 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 PSPC1Q8WXF1 523 aaKnown RBP20.02■□□□□ 0.8
TPM3-220ENST00000509601 ANKEF1Q9NU02 776 aa20.02■□□□□ 0.8
TPM3-220ENST00000509601 PLXNA4Q9HCM2 1894 aa20.01■□□□□ 0.79
TPM3-220ENST00000509601 XRCC6P12956 609 aaKnown RBP eCLIP20.01■□□□□ 0.799e-13■□□□□ 8.6
TPM3-220ENST00000509601 LAG3P18627 525 aa20.01■□□□□ 0.79
TPM3-220ENST00000509601 HOXA11P31270 313 aaPredicted RBP20.01■□□□□ 0.79
TPM3-220ENST00000509601 PLCB3Q01970 1234 aa20.01■□□□□ 0.79
TPM3-220ENST00000509601 PUS10Q3MIT2 529 aaKnown RBP20.01■□□□□ 0.79
TPM3-220ENST00000509601 KCNT2Q6UVM3 1135 aa20.01■□□□□ 0.79
TPM3-220ENST00000509601 THNSL1Q8IYQ7 743 aa20.01■□□□□ 0.79
TPM3-220ENST00000509601 C4orf32Q8N8J7 132 aa20.01■□□□□ 0.79
TPM3-220ENST00000509601 HELQQ8TDG4 1101 aa20.01■□□□□ 0.79
TPM3-220ENST00000509601 TCP11Q8WWU5 503 aa20.01■□□□□ 0.79
TPM3-220ENST00000509601 PIN4Q9Y237 131 aaKnown RBP20.01■□□□□ 0.79
TPM3-220ENST00000509601 POTEMA6NI47 508 aa20■□□□□ 0.79
TPM3-220ENST00000509601 MEIS3P2A8K0S8 358 aa20■□□□□ 0.79
TPM3-220ENST00000509601 FSCN2O14926 492 aa20■□□□□ 0.79
TPM3-220ENST00000509601 GAS2O43903 313 aaKnown RBP20■□□□□ 0.79
TPM3-220ENST00000509601 ARL2P36404 184 aa20■□□□□ 0.79
TPM3-220ENST00000509601 RABEP1Q15276 862 aa20■□□□□ 0.79
TPM3-220ENST00000509601 CSPP1Q1MSJ5 1256 aa20■□□□□ 0.79
TPM3-220ENST00000509601 TWF2Q6IBS0 349 aaKnown RBP20■□□□□ 0.79
TPM3-220ENST00000509601 CATSPER3Q86XQ3 398 aa20■□□□□ 0.79
TPM3-220ENST00000509601 ABI1Q8IZP0 508 aa20■□□□□ 0.79
TPM3-220ENST00000509601 FAM184AQ8NB25 1140 aa20■□□□□ 0.79
TPM3-220ENST00000509601 PIGOQ8TEQ8 1089 aa20■□□□□ 0.79
TPM3-220ENST00000509601 LPPQ93052 612 aa20■□□□□ 0.79
TPM3-220ENST00000509601 MTRQ99707 1265 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms