RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 SHTN1A0MZ66 631 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 C2orf71A6NGG8 1288 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 YDJCA8MPS7 323 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 OVOL3O00110 214 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 SNAP23O00161 211 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 CYR61O00622 381 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 PLIN1O60240 522 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 NPHS1O60500 1241 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 UFL1O94874 794 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 CSF1RP07333 972 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 HSPA6P17066 643 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 PAMP19021 973 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 THBS2P35442 1172 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 GMPSP49915 693 aaPredicted RBP5.7□□□□□ -1.5
NUP54-206ENST00000508465 MCTP2Q6DN12 878 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 LMBR1LQ6UX01 489 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 ETV3LQ6ZN32 361 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 ADAT2Q7Z6V5 191 aaKnown RBP5.7□□□□□ -1.5
NUP54-206ENST00000508465 ZC3H18Q86VM9 953 aaKnown RBP5.7□□□□□ -1.5
NUP54-206ENST00000508465 CPNE8Q86YQ8 564 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 SUPT20HQ8NEM7 779 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 CDK5RAP1Q96SZ6 601 aaKnown RBP5.7□□□□□ -1.5
NUP54-206ENST00000508465 MTA3Q9BTC8 594 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 MRIQ9BWK5 157 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 GBP3Q9H0R5 595 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 SMC4Q9NTJ3 1288 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 ST6GALNAC2Q9UJ37 374 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 RIC1Q4ADV7 1423 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 CDHR2Q9BYE9 1310 aa5.7□□□□□ -1.5
NUP54-206ENST00000508465 SNED1Q8TER0 1413 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 NPHP3-ACAD11A0A0J9YXS1 232 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 STXBP3O00186 592 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 GRM8O00222 908 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 TAF5LO75529 589 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 PPM1BO75688 479 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 BCAR3O75815 825 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 NTRK1P04629 796 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 NBPF7P0C2Y1 421 aaPredicted RBP5.69□□□□□ -1.5
NUP54-206ENST00000508465 EPHX2P34913 555 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 RARSP54136 660 aaKnown RBP5.69□□□□□ -1.5
NUP54-206ENST00000508465 FSTL1Q12841 308 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 ZYXQ15942 572 aaKnown RBP5.69□□□□□ -1.5
NUP54-206ENST00000508465 DPY19L1Q2PZI1 675 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 HEATR6Q6AI08 1181 aaKnown RBP5.69□□□□□ -1.5
NUP54-206ENST00000508465 CD300LDQ6UXZ3 194 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 DCP2Q8IU60 420 aaKnown RBP5.69□□□□□ -1.5
NUP54-206ENST00000508465 GPC2Q8N158 579 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 DNAJC5GQ8N7S2 189 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 RBBP8NLQ8NC74 664 aaPredicted RBP5.69□□□□□ -1.5
NUP54-206ENST00000508465 SMC1BQ8NDV3 1235 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 ADCY4Q8NFM4 1077 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 KAZALD1Q96I82 304 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 SUCLG2Q96I99 432 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 LCORQ96JN0 433 aaPredicted RBP5.69□□□□□ -1.5
NUP54-206ENST00000508465 KRTAP9-8Q9BYQ0 159 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 SCAND2PQ9GZW5 306 aaPredicted RBP5.69□□□□□ -1.5
NUP54-206ENST00000508465 AP5M1Q9H0R1 490 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 FBLN5Q9UBX5 448 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 HACL1Q9UJ83 578 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 TNNQ9UQP3 1299 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 TSC22D4Q9Y3Q8 395 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 BACE2Q9Y5Z0 518 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 SLC12A7Q9Y666 1083 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 ANKRD36CQ5JPF3 1778 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 ARFGEF2Q9Y6D5 1785 aa5.69□□□□□ -1.5
NUP54-206ENST00000508465 DDX60Q8IY21 1712 aaKnown RBP5.68□□□□□ -1.5
NUP54-206ENST00000508465 LAMB2P55268 1798 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 ANKRD18BA2A2Z9 1011 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 IQCA1LA6NCM1 817 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 PSMD14O00487 310 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 ECE2O60344 883 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 PPP1R11O60927 126 aaPredicted RBP5.68□□□□□ -1.5
NUP54-206ENST00000508465 FZD7O75084 574 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 ALDH1L1O75891 902 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 FUCA1P04066 466 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 C8BP07358 591 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 KLRK1P26718 216 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 IGHMBP2P38935 993 aaKnown RBP5.68□□□□□ -1.5
NUP54-206ENST00000508465 AMPD2Q01433 879 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 IFIT5Q13325 482 aaKnown RBP5.68□□□□□ -1.5
NUP54-206ENST00000508465 TNIP1Q15025 636 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 DLK2Q6UY11 383 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 LIMS2Q7Z4I7 341 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 SPRED1Q7Z699 444 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 PLEKHH3Q7Z736 793 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 TXNDC5Q8NBS9 432 aaKnown RBP5.68□□□□□ -1.5
NUP54-206ENST00000508465 FRAT1Q92837 279 aaPredicted RBP5.68□□□□□ -1.5
NUP54-206ENST00000508465 CDC5LQ99459 802 aaKnown RBP5.68□□□□□ -1.5
NUP54-206ENST00000508465 MPHOSPH8Q99549 860 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 MCMBPQ9BTE3 642 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 MXD3Q9BW11 206 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 SSBP3Q9BWW4 388 aaPredicted RBP5.68□□□□□ -1.5
NUP54-206ENST00000508465 PLA2G12BQ9BX93 195 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 PUS3Q9BZE2 481 aaKnown RBP5.68□□□□□ -1.5
NUP54-206ENST00000508465 USP44Q9H0E7 712 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 VPS33BQ9H267 617 aa5.68□□□□□ -1.5
NUP54-206ENST00000508465 CNOT7Q9UIV1 285 aaKnown RBP5.68□□□□□ -1.5
NUP54-206ENST00000508465 TRAF5O00463 557 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 CBFA2T2O43439 604 aa5.67□□□□□ -1.5
NUP54-206ENST00000508465 LAMTOR5O43504 91 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms