RNA–Protein interactions for RNA: ENST00000507162.1

VCAN-207, Transcript of versican, humanhuman

TSL 3

Gene VCAN, Length 766 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-207ENST00000507162 ZC3H11AO75152 810 aaKnown RBP eCLIP8.31□□□□□ -1.08
VCAN-207ENST00000507162 CNPP09543 421 aaKnown RBP8.31□□□□□ -1.08
VCAN-207ENST00000507162 SPATA31D3P0C874 917 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 ZSCAN20P17040 1043 aaPredicted RBP8.31□□□□□ -1.08
VCAN-207ENST00000507162 TARSP26639 723 aaKnown RBP8.31□□□□□ -1.08
VCAN-207ENST00000507162 NOVA1P51513 510 aaKnown RBP8.31□□□□□ -1.08
VCAN-207ENST00000507162 POLGP54098 1239 aaPredicted RBP8.31□□□□□ -1.08
VCAN-207ENST00000507162 SRSF5Q13243 272 aaKnown RBP8.31□□□□□ -1.08
VCAN-207ENST00000507162 HTR4Q13639 388 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 PPP2R5DQ14738 602 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 PLCB4Q15147 1175 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 PARM1Q6UWI2 310 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 SPATA31D4Q6ZUB0 917 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 TMEM173Q86WV6 379 aaPredicted RBP8.31□□□□□ -1.08
VCAN-207ENST00000507162 TMEM40Q8WWA1 233 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 TNPO1Q92973 898 aaKnown RBP8.31□□□□□ -1.08
VCAN-207ENST00000507162 PHKBQ93100 1093 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 CLDN23Q96B33 292 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 NELL2Q99435 816 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 ZKSCAN3Q9BRR0 538 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 DDX23Q9BUQ8 820 aaKnown RBP8.31□□□□□ -1.08
VCAN-207ENST00000507162 LSM14BQ9BX40 385 aaKnown RBP8.31□□□□□ -1.08
VCAN-207ENST00000507162 PRMT8Q9NR22 394 aaPredicted RBP8.31□□□□□ -1.08
VCAN-207ENST00000507162 MAN1C1Q9NR34 630 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 RXFP3Q9NSD7 469 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 PKD2L1Q9P0L9 805 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 F5P12259 2224 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 DOCK8Q8NF50 2099 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 LOXHD1Q8IVV2 1947 aa8.31□□□□□ -1.08
VCAN-207ENST00000507162 KDM3AQ9Y4C1 1321 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 SMG1Q96Q15 3661 aaKnown RBP8.3□□□□□ -1.08
VCAN-207ENST00000507162 SMIM35A0A1B0GVV1 85 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 C2CD2LO14523 706 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 GIPC1O14908 333 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 ATP9AO75110 1047 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 RFPL2O75678 378 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 KLRC1P26715 233 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 LIMK1P53667 647 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 CLLU1OSQ5K130 101 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 TSHZ3Q63HK5 1081 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 MTHFD1LQ6UB35 978 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 TPRG1Q6ZUI0 275 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 CEP68Q76N32 757 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 PDZD3Q86UT5 571 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 ECHDC2Q86YB7 292 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 SPNS2Q8IVW8 549 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 GIMAP8Q8ND71 665 aaPredicted RBP8.3□□□□□ -1.08
VCAN-207ENST00000507162 CMASQ8NFW8 434 aaPredicted RBP8.3□□□□□ -1.08
VCAN-207ENST00000507162 GATA6Q92908 595 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 FGF14Q92915 247 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 IGSF21Q96ID5 467 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 INPP4AQ96PE3 977 aaPredicted RBP8.3□□□□□ -1.08
VCAN-207ENST00000507162 SENP7Q9BQF6 1050 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 SCNM1Q9BWG6 230 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 TMEM121BQ9BXQ6 578 aaPredicted RBP8.3□□□□□ -1.08
VCAN-207ENST00000507162 ARRDC1-AS1Q9H2J1 176 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 AZI2Q9H6S1 392 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 ECHDC1Q9NTX5 307 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 MIA3Q5JRA6 1907 aa8.3□□□□□ -1.08
VCAN-207ENST00000507162 MYH7P12883 1935 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 CHURC1-FNTBB4DL54 471 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 HMMRO75330 724 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 STAM2O75886 525 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 PARP1P09874 1014 aaKnown RBP8.29□□□□□ -1.08
VCAN-207ENST00000507162 RLBP1P12271 317 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 RPS9P46781 194 aaKnown RBP8.29□□□□□ -1.08
VCAN-207ENST00000507162 FNTBP49356 437 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 PFKPQ01813 784 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 ZNF252P-AS1Q0IIN9 211 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 DSC3Q14574 896 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 KIZQ2M2Z5 673 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 HEATR6Q6AI08 1181 aaKnown RBP8.29□□□□□ -1.08
VCAN-207ENST00000507162 ELMSAN1Q6PJG2 1045 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 RSPO2Q6UXX9 243 aaPredicted RBP8.29□□□□□ -1.08
VCAN-207ENST00000507162 CYP26C1Q6V0L0 522 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 ZNF852Q6ZMS4 543 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 FAM43BQ6ZT52 329 aaPredicted RBP8.29□□□□□ -1.08
VCAN-207ENST00000507162 NLRX1Q86UT6 975 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 FAM228AQ86W67 206 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 KIAA0319LQ8IZA0 1049 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 SAMD3Q8N6K7 520 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 PNMA1Q8ND90 353 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 BCL7CQ8WUZ0 217 aaPredicted RBP8.29□□□□□ -1.08
VCAN-207ENST00000507162 OSMRQ99650 979 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 GBP3Q9H0R5 595 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 KAT14Q9H8E8 782 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 MRPL17Q9NRX2 175 aaKnown RBP8.29□□□□□ -1.08
VCAN-207ENST00000507162 ANAPC4Q9UJX5 808 aa8.29□□□□□ -1.08
VCAN-207ENST00000507162 NDRG2Q9UN36 371 aaKnown RBP8.29□□□□□ -1.08
VCAN-207ENST00000507162 MRPS17Q9Y2R5 130 aaKnown RBP8.29□□□□□ -1.08
VCAN-207ENST00000507162 LAMA1P25391 3075 aa8.28□□□□□ -1.08
VCAN-207ENST00000507162 PPP1R11O60927 126 aaPredicted RBP8.28□□□□□ -1.08
VCAN-207ENST00000507162 SEC24BO95487 1268 aa8.28□□□□□ -1.08
VCAN-207ENST00000507162 FGRP09769 529 aa8.28□□□□□ -1.08
VCAN-207ENST00000507162 TDGF1P13385 188 aa8.28□□□□□ -1.08
VCAN-207ENST00000507162 FSHRP23945 695 aa8.28□□□□□ -1.08
VCAN-207ENST00000507162 AK2P54819 239 aa8.28□□□□□ -1.08
VCAN-207ENST00000507162 GHRHRQ02643 423 aa8.28□□□□□ -1.08
VCAN-207ENST00000507162 RNASELQ05823 741 aaKnown RBP8.28□□□□□ -1.08
VCAN-207ENST00000507162 ADCY1Q08828 1119 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms