RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 GUCD1Q96NT3 240 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 MMTAG2Q9BU76 263 aaKnown RBP18.52■□□□□ 0.56
SNCA-209ENST00000506244 NFKBIZQ9BYH8 718 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 IFT122Q9HBG6 1241 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 CLIC4Q9Y696 253 aa18.52■□□□□ 0.56
SNCA-209ENST00000506244 ADGRA3Q8IWK6 1321 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 MGEA5O60502 916 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 ERLIN2O94905 339 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 F13A1P00488 732 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 CYP11B2P19099 503 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 TXLNAP40222 546 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 TAP1Q03518 808 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 DSC3Q14574 896 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 PPP2R5AQ15172 486 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 PTPAQ15257 358 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 ECM1Q16610 540 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 FAM102BQ5T8I3 360 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 FAM173BQ6P4H8 233 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 KIFAP3Q92845 792 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 SAMD11Q96NU1 681 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 TGS1Q96RS0 853 aaKnown RBP18.51■□□□□ 0.55
SNCA-209ENST00000506244 GAS2L1Q99501 681 aaPredicted RBP18.51■□□□□ 0.55
SNCA-209ENST00000506244 CDX2Q99626 313 aaPredicted RBP18.51■□□□□ 0.55
SNCA-209ENST00000506244 ELAC1Q9H777 363 aaKnown RBP18.51■□□□□ 0.55
SNCA-209ENST00000506244 PIN4Q9Y237 131 aaKnown RBP18.51■□□□□ 0.55
SNCA-209ENST00000506244 PCDHB7Q9Y5E2 793 aa18.51■□□□□ 0.55
SNCA-209ENST00000506244 A0A087WWV3 80 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 LCHNA4D1U4 455 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 LINC01553A4QN01 128 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 C9IYK1 514 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 HOXA2O43364 376 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 NASPP49321 788 aaPredicted RBP18.5■□□□□ 0.55
SNCA-209ENST00000506244 CEBPZQ03701 1054 aaKnown RBP18.5■□□□□ 0.55
SNCA-209ENST00000506244 NCBP1Q09161 790 aaKnown RBP18.5■□□□□ 0.55
SNCA-209ENST00000506244 CAPSQ13938 189 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 GRIN2CQ14957 1233 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 STK38Q15208 465 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 RTN4RL1Q86UN2 441 aaPredicted RBP18.5■□□□□ 0.55
SNCA-209ENST00000506244 IFNLR1Q8IU57 520 aaPredicted RBP18.5■□□□□ 0.55
SNCA-209ENST00000506244 ASAP3Q8TDY4 903 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 USP28Q96RU2 1077 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 TIPINQ9BVW5 301 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 TMEM161AQ9NX61 479 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 STXBP5LQ9Y2K9 1186 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 RWDD3Q9Y3V2 267 aa18.5■□□□□ 0.55
SNCA-209ENST00000506244 SRPRBQ9Y5M8 271 aaKnown RBP18.5■□□□□ 0.55
SNCA-209ENST00000506244 LRRIQ4A6NIV6 560 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 E9PMD0 336 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 DGKIO75912 1065 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 SKIP12755 728 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 FOSL2P15408 326 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 FGFR4P22455 802 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 GLRA2P23416 452 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 MARCKSP29966 332 aaPredicted RBP18.49■□□□□ 0.55
SNCA-209ENST00000506244 RAB27AP51159 221 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 PTENP60484 403 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 SLC39A14Q15043 492 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 TMEM119Q4V9L6 283 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 ATL3Q6DD88 541 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 TWF2Q6IBS0 349 aaKnown RBP18.49■□□□□ 0.55
SNCA-209ENST00000506244 MAEAQ7L5Y9 396 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 ZBTB8OSQ8IWT0 167 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 CMTR2Q8IYT2 770 aaKnown RBP18.49■□□□□ 0.55
SNCA-209ENST00000506244 FIBCD1Q8N539 461 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 IFT74Q96LB3 600 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 DRC1Q96MC2 740 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 C2orf40Q9H1Z8 148 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 RC3H2Q9HBD1 1191 aaKnown RBP18.49■□□□□ 0.55
SNCA-209ENST00000506244 AGPAT5Q9NUQ2 364 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 KCND2Q9NZV8 630 aa18.49■□□□□ 0.55
SNCA-209ENST00000506244 FBXO2Q9UK22 296 aaPredicted RBP18.49■□□□□ 0.55
SNCA-209ENST00000506244 INO80B-WBP1J3KQ70 363 aa18.48■□□□□ 0.55
SNCA-209ENST00000506244 CSDE1O75534 798 aaKnown RBP18.48■□□□□ 0.55
SNCA-209ENST00000506244 IBSPP21815 317 aaPredicted RBP18.48■□□□□ 0.55
SNCA-209ENST00000506244 AXLP30530 894 aa18.48■□□□□ 0.55
SNCA-209ENST00000506244 NAMPTP43490 491 aa18.48■□□□□ 0.55
SNCA-209ENST00000506244 GRB10Q13322 594 aa18.48■□□□□ 0.55
SNCA-209ENST00000506244 BTG3Q14201 252 aaPredicted RBP18.48■□□□□ 0.55
SNCA-209ENST00000506244 FOXD4L5Q5VV16 416 aaPredicted RBP18.48■□□□□ 0.55
SNCA-209ENST00000506244 CRIPAKQ8N1N5 446 aa18.48■□□□□ 0.55
SNCA-209ENST00000506244 KRI1Q8N9T8 703 aaKnown RBP18.48■□□□□ 0.55
SNCA-209ENST00000506244 FOXD4L4Q8WXT5 416 aaPredicted RBP18.48■□□□□ 0.55
SNCA-209ENST00000506244 RSPH1Q8WYR4 309 aa18.48■□□□□ 0.55
SNCA-209ENST00000506244 CCDC51Q96ER9 411 aa18.48■□□□□ 0.55
SNCA-209ENST00000506244 TRAIPQ9BWF2 469 aa18.48■□□□□ 0.55
SNCA-209ENST00000506244 GPRC5CQ9NQ84 441 aa18.48■□□□□ 0.55
SNCA-209ENST00000506244 CCDC39Q9UFE4 941 aa18.48■□□□□ 0.55
SNCA-209ENST00000506244 A0A0U1RQF3 1178 aa18.47■□□□□ 0.55
SNCA-209ENST00000506244 RBAK-RBAKDNI3L0D1 243 aa18.47■□□□□ 0.55
SNCA-209ENST00000506244 YEATS4O95619 227 aa18.47■□□□□ 0.55
SNCA-209ENST00000506244 SSBP05455 408 aaKnown RBP eCLIP18.47■□□□□ 0.55
SNCA-209ENST00000506244 ERVK-21P61565 698 aa18.47■□□□□ 0.55
SNCA-209ENST00000506244 CDCA2Q69YH5 1023 aaPredicted RBP18.47■□□□□ 0.55
SNCA-209ENST00000506244 MYLIPQ8WY64 445 aa18.47■□□□□ 0.55
SNCA-209ENST00000506244 ARNTL2Q8WYA1 636 aa18.47■□□□□ 0.55
SNCA-209ENST00000506244 ZNF689Q96CS4 500 aaPredicted RBP18.47■□□□□ 0.55
SNCA-209ENST00000506244 PNMA5Q96PV4 448 aa18.47■□□□□ 0.55
SNCA-209ENST00000506244 CCSER1Q9C0I3 900 aa18.47■□□□□ 0.55
SNCA-209ENST00000506244 CSRNP2Q9H175 543 aa18.47■□□□□ 0.55
SNCA-209ENST00000506244 PRDM12Q9H4Q4 367 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms