RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 P4HBP07237 508 aaKnown RBP20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 FGFR4P22455 802 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 FAM189BP81408 668 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 DRP2Q13474 957 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 PUS10Q3MIT2 529 aaKnown RBP20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 PLA2G4FQ68DD2 849 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 NCAPH2Q6IBW4 605 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 ANO5Q75V66 913 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 FERMT3Q86UX7 667 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 ABI1Q8IZP0 508 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 RNF169Q8NCN4 708 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 SPPL3Q8TCT6 385 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 NEK9Q8TD19 979 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 POF1BQ8WVV4 589 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 HAS1Q92839 578 aa20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 SUCLA2Q9P2R7 463 aaPredicted RBP20.12■□□□□ 0.81
SQSTM1-209ENST00000504627 A0A087WZ62 844 aa20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 IGKV6-21A0A0C4DH24 114 aa20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 FAM205CA6NFA0 338 aa20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 MAFO75444 373 aaPredicted RBP20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 CSDE1O75534 798 aaKnown RBP20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 HYAL1Q12794 435 aa20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 EPHA7Q15375 998 aa20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 MCTP1Q6DN14 999 aa20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 RHPN2Q8IUC4 686 aa20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 SLC7A3Q8WY07 619 aa20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 CEP170P1Q96L14 293 aa20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 CEP89Q96ST8 783 aa20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 FDXACB1Q9BRP7 624 aaPredicted RBP20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 INO80BQ9C086 356 aaPredicted RBP20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 FOXP1Q9H334 677 aaPredicted RBP20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 CYP26B1Q9NR63 512 aa20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 TYW1Q9NV66 732 aaKnown RBP20.11■□□□□ 0.81
SQSTM1-209ENST00000504627 IL9P15248 144 aa20.1■□□□□ 0.81
SQSTM1-209ENST00000504627 SFPQP23246 707 aaKnown RBP eCLIP20.1■□□□□ 0.81
SQSTM1-209ENST00000504627 CAMK1Q14012 370 aa20.1■□□□□ 0.81
SQSTM1-209ENST00000504627 DIS3L2Q8IYB7 885 aaKnown RBP20.1■□□□□ 0.81
SQSTM1-209ENST00000504627 EXOC8Q8IYI6 725 aa20.1■□□□□ 0.81
SQSTM1-209ENST00000504627 THNSL1Q8IYQ7 743 aa20.1■□□□□ 0.81
SQSTM1-209ENST00000504627 MICAL1Q8TDZ2 1067 aa20.1■□□□□ 0.81
SQSTM1-209ENST00000504627 LXNQ9BS40 222 aa20.1■□□□□ 0.81
SQSTM1-209ENST00000504627 TMEM117Q9H0C3 514 aa20.1■□□□□ 0.81
SQSTM1-209ENST00000504627 DACT1Q9NYF0 836 aa20.1■□□□□ 0.81
SQSTM1-209ENST00000504627 FAM50BQ9Y247 325 aa20.1■□□□□ 0.81
SQSTM1-209ENST00000504627 GRXCR2A6NFK2 248 aa20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 BTBD18B2RXH4 712 aa20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 DNAJB1P25685 340 aa20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 U2AF2P26368 475 aaKnown RBP eCLIP20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 POLGP54098 1239 aaPredicted RBP20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 NPEPPSP55786 919 aa20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 GNL2Q13823 731 aaKnown RBP20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 CSPP1Q1MSJ5 1256 aa20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 OTUD6AQ7L8S5 288 aa20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 ZNF410Q86VK4 478 aa20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 ECHDC2Q86YB7 292 aa20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 TNFRSF25Q93038 417 aa20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 NLRP4Q96MN2 994 aa20.09■□□□□ 0.81
SQSTM1-209ENST00000504627 A0A0U1RQF3 1178 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 LAG3P18627 525 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 YWHABP31946 246 aaKnown RBP20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 IRS1P35568 1242 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 CYP4A11Q02928 519 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 COL19A1Q14993 1142 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 CALCRLQ16602 461 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 ATL3Q6DD88 541 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 C4orf19Q8IY42 314 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 COLGALT1Q8NBJ5 622 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 DYDC2Q96IM9 177 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 CASD1Q96PB1 797 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 ZSWIM4Q9H7M6 989 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 CHST12Q9NRB3 414 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 RGL1Q9NZL6 768 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 HCSTQ9UBK5 93 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 PCDHA12Q9UN75 941 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 PPME1Q9Y570 386 aa20.08■□□□□ 0.81
SQSTM1-209ENST00000504627 FGF18O76093 207 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 SSTR3P32745 418 aaPredicted RBP20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 GTF2F1P35269 517 aaKnown RBP eCLIP20.07■□□□□ 0.89e-8■■■■■ 28.6
SQSTM1-209ENST00000504627 RFC5P40937 340 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 UBE3AQ05086 875 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 CTTNQ14247 550 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 CLUL1Q15846 466 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 CTC1Q2NKJ3 1217 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 CATSPER4Q7RTX7 472 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 RBM23Q86U06 439 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 NOSTRINQ8IVI9 506 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 KSR1Q8IVT5 923 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 TPH2Q8IWU9 490 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 FAM178BQ8IXR5 827 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 LRRC43Q8N309 656 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 C1QTNF1Q9BXJ1 281 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 CWH43Q9H720 699 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 TLR9Q9NR96 1032 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 BMP2KQ9NSY1 1161 aaPredicted RBP20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 WRAP73Q9P2S5 460 aaPredicted RBP20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 PIN4Q9Y237 131 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 COL4A3BPQ9Y5P4 624 aa20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 FNDC1Q4ZHG4 1894 aaPredicted RBP20.07■□□□□ 0.8
SQSTM1-209ENST00000504627 KIAA1671Q9BY89 1806 aa20.06■□□□□ 0.8
SQSTM1-209ENST00000504627 GOLGA6L22H0YM25 854 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms