RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 AENQ8WTP8 325 aaKnown RBP13.04□□□□□ -0.32
NUP54-202ENST00000502850 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.04□□□□□ -0.32
NUP54-202ENST00000502850 ANKEF1Q9NU02 776 aa13.04□□□□□ -0.32
NUP54-202ENST00000502850 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.04□□□□□ -0.32
NUP54-202ENST00000502850 APEX2Q9UBZ4 518 aa13.04□□□□□ -0.32
NUP54-202ENST00000502850 H3BQF6 201 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 MAFGO15525 162 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 DHX15O43143 795 aaKnown RBP13.03□□□□□ -0.32
NUP54-202ENST00000502850 NCK2O43639 380 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 RARRES1P49788 294 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 CYP2J2P51589 502 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 PSMC5P62195 406 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 KCNA1Q09470 495 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 MAPK7Q13164 816 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 CLUL1Q15846 466 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 PNMA8AQ86V59 439 aaPredicted RBP13.03□□□□□ -0.32
NUP54-202ENST00000502850 CDAN1Q8IWY9 1227 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 TEPSINQ96N21 525 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 INTS2Q9H0H0 1204 aaKnown RBP13.03□□□□□ -0.32
NUP54-202ENST00000502850 WRAP73Q9P2S5 460 aaPredicted RBP13.03□□□□□ -0.32
NUP54-202ENST00000502850 HPCAL4Q9UM19 191 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 CLEC11AQ9Y240 323 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 ZHX2Q9Y6X8 837 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 PHIPQ8WWQ0 1821 aa13.03□□□□□ -0.32
NUP54-202ENST00000502850 LRRIQ3A6PVS8 624 aaPredicted RBP13.02□□□□□ -0.32
NUP54-202ENST00000502850 DDX39AO00148 427 aaKnown RBP13.02□□□□□ -0.32
NUP54-202ENST00000502850 PMM2O15305 246 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 VCAM1P19320 739 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 NOP2P46087 812 aaKnown RBP13.02□□□□□ -0.32
NUP54-202ENST00000502850 APBA1Q02410 837 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 PGM5Q15124 567 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 ENOX2Q16206 610 aaKnown RBP13.02□□□□□ -0.32
NUP54-202ENST00000502850 RNF207Q6ZRF8 634 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 USP37Q86T82 979 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 NLRX1Q86UT6 975 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 CPXCR1Q8N123 301 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 EIF1ADQ8N9N8 165 aaKnown RBP13.02□□□□□ -0.32
NUP54-202ENST00000502850 CAVIN3Q969G5 261 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 COL20A1Q9P218 1284 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 VPS18Q9P253 973 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.02□□□□□ -0.32
NUP54-202ENST00000502850 DNAJC12Q9UKB3 198 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 DIS3Q9Y2L1 958 aaKnown RBP13.02□□□□□ -0.32
NUP54-202ENST00000502850 NCANO14594 1321 aa13.02□□□□□ -0.32
NUP54-202ENST00000502850 EVI5O60447 810 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 KIF4AO95239 1232 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 FTCDO95954 541 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 TMEM253P0C7T8 217 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 CCND2P30279 289 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 YWHABP31946 246 aaKnown RBP13.02□□□□□ -0.33
NUP54-202ENST00000502850 CXCR5P32302 372 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 SMTNP53814 917 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 RPS6P62753 249 aaKnown RBP13.02□□□□□ -0.33
NUP54-202ENST00000502850 GTF2BQ00403 316 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 ENPEPQ07075 957 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 PAK2Q13177 524 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 ITGB3BPQ13352 177 aaPredicted RBP13.02□□□□□ -0.33
NUP54-202ENST00000502850 ARHGEF16Q5VV41 709 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 ZNF746Q6NUN9 644 aaPredicted RBP13.02□□□□□ -0.33
NUP54-202ENST00000502850 GPIHBP1Q8IV16 184 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 DAW1Q8N136 415 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 XXYLT1Q8NBI6 393 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 ACTRT1Q8TDG2 376 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 GPRASP2Q96D09 838 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 CDHR1Q96JP9 859 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 INPP4AQ96PE3 977 aaPredicted RBP13.02□□□□□ -0.33
NUP54-202ENST00000502850 RMDN3Q96TC7 470 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 LRRC1Q9BTT6 524 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 PACSIN1Q9BY11 444 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 SUGCTQ9HAC7 445 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 C17orf75Q9HAS0 396 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 RAVER2Q9HCJ3 691 aaKnown RBP13.02□□□□□ -0.33
NUP54-202ENST00000502850 PXMP2Q9NR77 195 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 CALCOCO1Q9P1Z2 691 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 SUCLA2Q9P2R7 463 aaPredicted RBP13.02□□□□□ -0.33
NUP54-202ENST00000502850 KCNG1Q9UIX4 513 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 ADAM21Q9UKJ8 722 aa13.02□□□□□ -0.33
NUP54-202ENST00000502850 ARID2Q68CP9 1835 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 GOLGA6BA6NDN3 693 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 CCDC188H7C350 402 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 ZBTB39O15060 712 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 STAM2O75886 525 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 ITGBL1O95965 494 aaPredicted RBP13.01□□□□□ -0.33
NUP54-202ENST00000502850 SCP2P22307 547 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 NCKAP1LP55160 1127 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 MRPS9P82933 396 aaKnown RBP13.01□□□□□ -0.33
NUP54-202ENST00000502850 DRAP1Q14919 205 aaPredicted RBP13.01□□□□□ -0.33
NUP54-202ENST00000502850 ALS2CLQ60I27 953 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 OTUD6AQ7L8S5 288 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 SLFN11Q7Z7L1 901 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 SCYL3Q8IZE3 742 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 LRRC57Q8N9N7 239 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 TPCN2Q8NHX9 752 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 IL31RAQ8NI17 732 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 CTNNBL1Q8WYA6 563 aaPredicted RBP13.01□□□□□ -0.33
NUP54-202ENST00000502850 RFFLQ8WZ73 363 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 PKNOX2Q96KN3 472 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 TRERF1Q96PN7 1200 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 PSMB7Q99436 277 aa13.01□□□□□ -0.33
NUP54-202ENST00000502850 SENP7Q9BQF6 1050 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms