RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 IPO9Q96P70 1041 aaKnown RBP17.26■□□□□ 0.35
CPNE1-228ENST00000498814 TIPINQ9BVW5 301 aa17.26■□□□□ 0.35
CPNE1-228ENST00000498814 INO80BQ9C086 356 aaPredicted RBP17.26■□□□□ 0.35
CPNE1-228ENST00000498814 IFT122Q9HBG6 1241 aa17.26■□□□□ 0.35
CPNE1-228ENST00000498814 ERVK-5Q9HDB9 667 aa17.26■□□□□ 0.35
CPNE1-228ENST00000498814 GPRC5CQ9NQ84 441 aa17.26■□□□□ 0.35
CPNE1-228ENST00000498814 CXXC1Q9P0U4 656 aaPredicted RBP17.26■□□□□ 0.35
CPNE1-228ENST00000498814 RBAK-RBAKDNI3L0D1 243 aa17.25■□□□□ 0.35
CPNE1-228ENST00000498814 CAPSQ13938 189 aa17.25■□□□□ 0.35
CPNE1-228ENST00000498814 NAALADL2Q58DX5 795 aa17.25■□□□□ 0.35
CPNE1-228ENST00000498814 RESP18Q5W5W9 173 aa17.25■□□□□ 0.35
CPNE1-228ENST00000498814 SRGAP1Q7Z6B7 1085 aa17.25■□□□□ 0.35
CPNE1-228ENST00000498814 FAM228AQ86W67 206 aa17.25■□□□□ 0.35
CPNE1-228ENST00000498814 IFNLR1Q8IU57 520 aaPredicted RBP17.25■□□□□ 0.35
CPNE1-228ENST00000498814 RNF149Q8NC42 400 aa17.25■□□□□ 0.35
CPNE1-228ENST00000498814 FTHL17Q9BXU8 183 aa17.25■□□□□ 0.35
CPNE1-228ENST00000498814 ST3GAL5Q9UNP4 418 aa17.25■□□□□ 0.35
CPNE1-228ENST00000498814 SLC4A7Q9Y6M7 1214 aa17.25■□□□□ 0.35
CPNE1-228ENST00000498814 A0A087X0B3 334 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 ZBBXA8MT70 800 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 STAT6P42226 847 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 PHKA2P46019 1235 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 PTENP60484 403 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 WDR5P61964 334 aaKnown RBP17.24■□□□□ 0.35
CPNE1-228ENST00000498814 NFX1Q12986 1120 aaKnown RBP17.24■□□□□ 0.35
CPNE1-228ENST00000498814 MCM6Q14566 821 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 LRIT3Q3SXY7 679 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 ARSHQ5FYA8 562 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 DRC1Q96MC2 740 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 NFKBIZQ9BYH8 718 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 PANK2Q9BZ23 570 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 FAM13BQ9NYF5 915 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 TTC3P53804 2025 aa17.24■□□□□ 0.35
CPNE1-228ENST00000498814 GBF1Q92538 1859 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 HIP1RO75146 1068 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 SFPQP23246 707 aaKnown RBP eCLIP17.23■□□□□ 0.35
CPNE1-228ENST00000498814 CMA1P23946 247 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 NAMPTP43490 491 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 KCNJ6P48051 423 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 MAPK7Q13164 816 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 DHX8Q14562 1220 aaKnown RBP17.23■□□□□ 0.35
CPNE1-228ENST00000498814 PPP2R5AQ15172 486 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 E2F4Q16254 413 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 GPBP1Q86WP2 473 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 DAW1Q8N136 415 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 PDILTQ8N807 584 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 PHOSPHO2Q8TCD6 241 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 BSNDQ8WZ55 320 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 TMX1Q9H3N1 280 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 C17orf75Q9HAS0 396 aa17.23■□□□□ 0.35
CPNE1-228ENST00000498814 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.22■□□□□ 0.35
CPNE1-228ENST00000498814 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.22■□□□□ 0.35
CPNE1-228ENST00000498814 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.22■□□□□ 0.35
CPNE1-228ENST00000498814 ENPP3O14638 875 aa17.22■□□□□ 0.35
CPNE1-228ENST00000498814 CSDE1O75534 798 aaKnown RBP17.22■□□□□ 0.35
CPNE1-228ENST00000498814 PCBP1Q15365 356 aaKnown RBP eCLIP17.22■□□□□ 0.351e-8■■■■■ 45.6
CPNE1-228ENST00000498814 HABP4Q5JVS0 413 aaKnown RBP17.22■□□□□ 0.35
CPNE1-228ENST00000498814 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.22■□□□□ 0.35
CPNE1-228ENST00000498814 SV2BQ7L1I2 683 aa17.22■□□□□ 0.35
CPNE1-228ENST00000498814 RTN4RL1Q86UN2 441 aaPredicted RBP17.22■□□□□ 0.35
CPNE1-228ENST00000498814 IQUBQ8NA54 791 aa17.22■□□□□ 0.35
CPNE1-228ENST00000498814 IFT74Q96LB3 600 aa17.22■□□□□ 0.35
CPNE1-228ENST00000498814 SLC9A7Q96T83 725 aa17.22■□□□□ 0.35
CPNE1-228ENST00000498814 TSPYL2Q9H2G4 693 aaPredicted RBP17.22■□□□□ 0.35
CPNE1-228ENST00000498814 CUEDC2Q9H467 287 aa17.22■□□□□ 0.35
CPNE1-228ENST00000498814 MINDY3Q9H8M7 445 aa17.22■□□□□ 0.35
CPNE1-228ENST00000498814 GDPD2Q9HCC8 539 aa17.22■□□□□ 0.35
CPNE1-228ENST00000498814 POLD4Q9HCU8 107 aa17.22■□□□□ 0.35
CPNE1-228ENST00000498814 ODF2LQ9ULJ1 636 aa17.22■□□□□ 0.35
CPNE1-228ENST00000498814 LAMA2P24043 3122 aaKnown RBP17.21■□□□□ 0.35
CPNE1-228ENST00000498814 A0A1W2PQ27 194 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 A0A1W2PQ64 194 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 A0A1W2PQD8 194 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 LRRIQ4A6NIV6 560 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 AMHP03971 560 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 ATP2A2P16615 1042 aaKnown RBP17.21■□□□□ 0.35
CPNE1-228ENST00000498814 FGFR4P22455 802 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 DEFB103AP81534 67 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 DSC3Q14574 896 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 CDCA2Q69YH5 1023 aaPredicted RBP17.21■□□□□ 0.35
CPNE1-228ENST00000498814 LINC01599Q8WXQ3 324 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 PYM1Q9BRP8 204 aaKnown RBP17.21■□□□□ 0.35
CPNE1-228ENST00000498814 C2orf40Q9H1Z8 148 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 CHST12Q9NRB3 414 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 KCNH3Q9ULD8 1083 aa17.21■□□□□ 0.35
CPNE1-228ENST00000498814 LAMA3Q16787 3333 aa17.21■□□□□ 0.34
CPNE1-228ENST00000498814 NPHP3-ACAD11A0A0J9YXS1 232 aa17.2■□□□□ 0.34
CPNE1-228ENST00000498814 FAM237AA0A1B0GTK4 181 aa17.2■□□□□ 0.34
CPNE1-228ENST00000498814 POLR2DO15514 142 aaKnown RBP17.2■□□□□ 0.34
CPNE1-228ENST00000498814 SMAD3P84022 425 aaKnown RBP17.2■□□□□ 0.34
CPNE1-228ENST00000498814 MBTD1Q05BQ5 628 aa17.2■□□□□ 0.34
CPNE1-228ENST00000498814 RAD51AP2Q09MP3 1159 aa17.2■□□□□ 0.34
CPNE1-228ENST00000498814 GIT2Q14161 759 aa17.2■□□□□ 0.34
CPNE1-228ENST00000498814 FAM109BQ6ICB4 259 aaPredicted RBP17.2■□□□□ 0.34
CPNE1-228ENST00000498814 CATSPER4Q7RTX7 472 aa17.2■□□□□ 0.34
CPNE1-228ENST00000498814 DEPTORQ8TB45 409 aa17.2■□□□□ 0.34
CPNE1-228ENST00000498814 DHX58Q96C10 678 aa17.2■□□□□ 0.34
CPNE1-228ENST00000498814 ADAM2Q99965 735 aa17.2■□□□□ 0.34
CPNE1-228ENST00000498814 REEP2Q9BRK0 252 aa17.2■□□□□ 0.34
CPNE1-228ENST00000498814 RGS18Q9NS28 235 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms