RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-208ENST00000498325 LAMA2P24043 3122 aaKnown RBP6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 CCDC196A0A1B0GTZ2 297 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 CARNS1A5YM72 827 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 F8W031 263 aaPredicted RBP6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 SH2B2O14492 632 aaPredicted RBP6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 CPLX1O14810 134 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 ZBTB43O43298 467 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 ORC4O43929 436 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 RANBP6O60518 1105 aaKnown RBP6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 SEMA7AO75326 666 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 CDKL5O76039 1030 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 BAG4O95429 457 aaKnown RBP6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 ESR1P03372 595 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 FGRP09769 529 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 CCL5P13501 91 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 BMP6P22004 513 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 ZNF280AP59817 542 aaPredicted RBP6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 CCT2P78371 535 aaKnown RBP6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 SCRN1Q12765 414 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 PPP2R5BQ15173 497 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 C12orf60Q5U649 245 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 LETMD1Q6P1Q0 360 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 CYB5R4Q7L1T6 521 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 TMPRSS7Q7RTY8 843 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 SGMS1Q86VZ5 419 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 IRF2BP1Q8IU81 584 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 ZNF444Q8N0Y2 327 aaPredicted RBP6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 MFSD2AQ8NA29 543 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 SMARCC2Q8TAQ2 1214 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 RIN3Q8TB24 985 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 IGDCC4Q8TDY8 1250 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 U2AF1L4Q8WU68 220 aaKnown RBP6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 WNK4Q96J92 1243 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 CLMNQ96JQ2 1002 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 NECAB3Q96P71 396 aaPredicted RBP6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 ADAMTS10Q9H324 1103 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 FBRSQ9HAH7 460 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 USP40Q9NVE5 1235 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 SLC12A7Q9Y666 1083 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 NEDD4P46934 1319 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 MYO3BQ8WXR4 1341 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 MYH2Q9UKX2 1941 aa6.13□□□□□ -1.43
HMGXB4-208ENST00000498325 CDH23Q9H251 3354 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 PRAMEF27A3QJZ7 478 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 VPS37CA5D8V6 355 aaPredicted RBP6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 TSPY2A6NKD2 308 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 GOLGA8BA8MQT2 603 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 H3BQV1 296 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 VIL1P09327 827 aaKnown RBP6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 CALM1P0DP23 149 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 CALM2P0DP24 149 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 CALM3P0DP25 149 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 NCLP19338 710 aaKnown RBP6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 CTGFP29279 349 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 CRKP46108 304 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 MMP14P50281 582 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 METAP2P50579 478 aaKnown RBP eCLIP6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 RBM5P52756 815 aaKnown RBP eCLIP6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 RCAN1P53805 252 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 RHBDL3P58872 404 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 SLBPQ14493 270 aaKnown RBP eCLIP6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 ZNF385BQ569K4 471 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 DACT2Q5SW24 774 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 LLGL2Q6P1M3 1020 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 PRRT2Q7Z6L0 340 aaPredicted RBP6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 ZNF605Q86T29 641 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 MAPKAPK5Q8IW41 473 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 C7orf61Q8IZ16 206 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 USP38Q8NB14 1042 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 RGS22Q8NE09 1264 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 SLC6A17Q9H1V8 727 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 LY9Q9HBG7 655 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 INCENPQ9NQS7 918 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 RTEL1Q9NZ71 1219 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 ZDHHC9Q9Y397 364 aa6.12□□□□□ -1.43
HMGXB4-208ENST00000498325 SSC5DA1L4H1 1573 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 TNKSO95271 1327 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 CYP2D7A0A087X1C5 515 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 MYOCOSA0A1B0GUC4 107 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 PTPDC1A2A3K4 754 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 GOLGA8AA7E2F4 631 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 RBAK-RBAKDNI3L0D1 243 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 PEX10O60683 326 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 F13A1P00488 732 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 ZBTB48P10074 688 aaPredicted RBP6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 KIR3DL1P43629 444 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 SERPINB4P48594 390 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 TFAP4Q01664 338 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 TNK2Q07912 1038 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 ST3GAL1Q11201 340 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 PKP1Q13835 747 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 LRRC14Q15048 493 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 NBPF9Q3BBW0 867 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 IFIT1BQ5T764 474 aaKnown RBP6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 APOA5Q6Q788 366 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 NXPE4Q6UWF7 544 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 ARMC9Q7Z3E5 817 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 CATIPQ7Z7H3 387 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 CREG2Q8IUH2 290 aa6.11□□□□□ -1.43
HMGXB4-208ENST00000498325 KIAA0825Q8IV33 1275 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms