RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 ECE2O60344 883 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 CORO7P57737 925 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 KIF23Q02241 960 aaPredicted RBP8.18□□□□□ -1.1
VIM-207ENST00000495528 LMOD3Q0VAK6 560 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 GIMAP6Q6P9H5 292 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 ZNF605Q86T29 641 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 NOP9Q86U38 636 aaKnown RBP8.18□□□□□ -1.1
VIM-207ENST00000495528 CCDC146Q8IYE0 955 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 C2orf69Q8N8R5 385 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 PLBD2Q8NHP8 589 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 DCPSQ96C86 337 aaKnown RBP8.18□□□□□ -1.1
VIM-207ENST00000495528 MTA3Q9BTC8 594 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 NPFFR2Q9Y5X5 522 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 RTL9Q8NET4 1388 aa8.18□□□□□ -1.1
VIM-207ENST00000495528 C22orf46C9J442 243 aa8.17□□□□□ -1.1
VIM-207ENST00000495528 VIL1P09327 827 aaKnown RBP8.17□□□□□ -1.1
VIM-207ENST00000495528 RPS12P25398 132 aaKnown RBP8.17□□□□□ -1.1
VIM-207ENST00000495528 RPS8P62241 208 aaKnown RBP8.17□□□□□ -1.1
VIM-207ENST00000495528 RAB3GAP1Q15042 981 aa8.17□□□□□ -1.1
VIM-207ENST00000495528 TESK1Q15569 626 aa8.17□□□□□ -1.1
VIM-207ENST00000495528 ZC3H12BQ5HYM0 836 aaKnown RBP8.17□□□□□ -1.1
VIM-207ENST00000495528 TBC1D16Q8TBP0 767 aa8.17□□□□□ -1.1
VIM-207ENST00000495528 EYA3Q99504 573 aa8.17□□□□□ -1.1
VIM-207ENST00000495528 GPR27Q9NS67 375 aa8.17□□□□□ -1.1
VIM-207ENST00000495528 RNF186Q9NXI6 227 aa8.17□□□□□ -1.1
VIM-207ENST00000495528 NDOR1Q9UHB4 597 aa8.17□□□□□ -1.1
VIM-207ENST00000495528 ASTN2O75129 1339 aaPredicted RBP8.17□□□□□ -1.1
VIM-207ENST00000495528 MYBBP1AQ9BQG0 1328 aaKnown RBP8.17□□□□□ -1.1
VIM-207ENST00000495528 DUOX1Q9NRD9 1551 aa8.17□□□□□ -1.1
VIM-207ENST00000495528 CASP8AP2Q9UKL3 1982 aa8.17□□□□□ -1.1
VIM-207ENST00000495528 OR14I1A6ND48 311 aa8.16□□□□□ -1.1
VIM-207ENST00000495528 IRS4O14654 1257 aaPredicted RBP8.16□□□□□ -1.1
VIM-207ENST00000495528 MPOP05164 745 aa8.16□□□□□ -1.1
VIM-207ENST00000495528 C6orf222P0C671 652 aaPredicted RBP8.16□□□□□ -1.1
VIM-207ENST00000495528 LSAMPQ13449 338 aa8.16□□□□□ -1.1
VIM-207ENST00000495528 CABP7Q86V35 215 aa8.16□□□□□ -1.1
VIM-207ENST00000495528 TRMT2BQ96GJ1 504 aaKnown RBP8.16□□□□□ -1.1
VIM-207ENST00000495528 TMEM169Q96HH4 297 aa8.16□□□□□ -1.1
VIM-207ENST00000495528 TNFRSF12AQ9NP84 129 aa8.16□□□□□ -1.1
VIM-207ENST00000495528 FANCLQ9NW38 375 aa8.16□□□□□ -1.1
VIM-207ENST00000495528 SAGE1Q9NXZ1 904 aa8.16□□□□□ -1.1
VIM-207ENST00000495528 CLDND1Q9NY35 253 aa8.16□□□□□ -1.1
VIM-207ENST00000495528 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.16□□□□□ -1.1
VIM-207ENST00000495528 PPARGC1AQ9UBK2 798 aaKnown RBP8.16□□□□□ -1.1
VIM-207ENST00000495528 DBF4Q9UBU7 674 aaPredicted RBP8.16□□□□□ -1.1
VIM-207ENST00000495528 TAF1P21675 1872 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 ZC3H12DA2A288 527 aaKnown RBP8.15□□□□□ -1.1
VIM-207ENST00000495528 CCER2I3L3R5 266 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 PPP1R12AO14974 1030 aaPredicted RBP8.15□□□□□ -1.1
VIM-207ENST00000495528 NTRK1P04629 796 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 DBHP09172 617 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 GTF2A2P52657 109 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 ERVFRD-1P60508 538 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 IRF2BP1Q8IU81 584 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 PLEKHO2Q8TD55 490 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 PTPRN2Q92932 1015 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 CDCA5Q96FF9 252 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 EPB41L4BQ9H329 900 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 DCP1AQ9NPI6 582 aaPredicted RBP8.15□□□□□ -1.1
VIM-207ENST00000495528 HYPKQ9NX55 129 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 TMEM260Q9NX78 707 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 GGA3Q9NZ52 723 aa8.15□□□□□ -1.1
VIM-207ENST00000495528 DBR1Q9UK59 544 aaKnown RBP8.15□□□□□ -1.1
VIM-207ENST00000495528 ANKRD36CQ5JPF3 1778 aa8.15□□□□□ -1.11
VIM-207ENST00000495528 COL4A1P02462 1669 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 F8W031 263 aaPredicted RBP8.14□□□□□ -1.11
VIM-207ENST00000495528 ASMTLO95671 621 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 HOXB7P09629 217 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 SOX10P56693 466 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 ZNF280AP59817 542 aaPredicted RBP8.14□□□□□ -1.11
VIM-207ENST00000495528 GPR85P60893 370 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 GABREP78334 506 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 CBX2Q14781 532 aaPredicted RBP8.14□□□□□ -1.11
VIM-207ENST00000495528 RSPO2Q6UXX9 243 aaPredicted RBP8.14□□□□□ -1.11
VIM-207ENST00000495528 LBX2Q6XYB7 198 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 MTDHQ86UE4 582 aaKnown RBP8.14□□□□□ -1.11
VIM-207ENST00000495528 IFNL3Q8IZI9 196 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 FAM9BQ8IZU0 186 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 RUNDC1Q96C34 613 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 FAM53CQ9NYF3 392 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 SCAF8Q9UPN6 1271 aaKnown RBP8.14□□□□□ -1.11
VIM-207ENST00000495528 RNF114Q9Y508 228 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 HCFC2Q9Y5Z7 792 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 LAMB2P55268 1798 aa8.14□□□□□ -1.11
VIM-207ENST00000495528 UFL1O94874 794 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 GLI4P10075 376 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 C21orf62-AS1Q17RA5 79 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 RPTNQ6XPR3 784 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 MOB2Q70IA6 237 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 HOMER1Q86YM7 354 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 RASAL3Q86YV0 1011 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 AGBL3Q8NEM8 1001 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 APPBP2Q92624 585 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 MYD88Q99836 296 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 JAM3Q9BX67 310 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 NCOA5Q9HCD5 579 aaKnown RBP8.13□□□□□ -1.11
VIM-207ENST00000495528 KLHL14Q9P2G3 628 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 COA3Q9Y2R0 106 aaPredicted RBP8.13□□□□□ -1.11
VIM-207ENST00000495528 SIT1Q9Y3P8 196 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 PCDHA9Q9Y5H5 950 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms