RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 OSGEPQ9NPF4 335 aa12.18□□□□□ -0.46
CHMP3-209ENST00000494623 LARSQ9P2J5 1176 aaKnown RBP12.18□□□□□ -0.46
CHMP3-209ENST00000494623 PGAP2Q9UHJ9 254 aa12.18□□□□□ -0.46
CHMP3-209ENST00000494623 FOXN3O00409 490 aaPredicted RBP12.18□□□□□ -0.46
CHMP3-209ENST00000494623 KRT13P13646 458 aa12.18□□□□□ -0.46
CHMP3-209ENST00000494623 LMNB1P20700 586 aa12.18□□□□□ -0.46
CHMP3-209ENST00000494623 PAK2Q13177 524 aa12.18□□□□□ -0.46
CHMP3-209ENST00000494623 MTMR1Q13613 665 aa12.18□□□□□ -0.46
CHMP3-209ENST00000494623 SKIDA1Q1XH10 827 aa12.18□□□□□ -0.46
CHMP3-209ENST00000494623 MCF2L2Q86YR7 1114 aa12.18□□□□□ -0.46
CHMP3-209ENST00000494623 CAMKK2Q96RR4 588 aa12.18□□□□□ -0.46
CHMP3-209ENST00000494623 STRA6Q9BX79 667 aa12.18□□□□□ -0.46
CHMP3-209ENST00000494623 APEX2Q9UBZ4 518 aa12.18□□□□□ -0.46
CHMP3-209ENST00000494623 PHF20L1A8MW92 1017 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 OPA1O60313 960 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 PPP1R37O75864 691 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 BCRP11274 1271 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 QARSP47897 775 aaKnown RBP12.17□□□□□ -0.46
CHMP3-209ENST00000494623 RARRES1P49788 294 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 ALS2CLQ60I27 953 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 FOXR1Q6PIV2 292 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 LRRC31Q6UY01 552 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 MTMR14Q8NCE2 650 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 SLC35G2Q8TBE7 412 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 NEK9Q8TD19 979 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 SYTL5Q8TDW5 730 aaPredicted RBP12.17□□□□□ -0.46
CHMP3-209ENST00000494623 CCDC43Q96MW1 224 aaKnown RBP12.17□□□□□ -0.46
CHMP3-209ENST00000494623 CBWD1Q9BRT8 395 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 DEFB129Q9H1M3 183 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 MYOZ2Q9NPC6 264 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 UBE2TQ9NPD8 197 aaPredicted RBP12.17□□□□□ -0.46
CHMP3-209ENST00000494623 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.17□□□□□ -0.46
CHMP3-209ENST00000494623 CWC15Q9P013 229 aaKnown RBP12.17□□□□□ -0.46
CHMP3-209ENST00000494623 TMEM59LQ9UK28 342 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 INTUQ9ULD6 942 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 EMSYQ7Z589 1322 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 SLFN11Q7Z7L1 901 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 SLC9A9Q8IVB4 645 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 ZSWIM2Q8NEG5 633 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 ACTRT1Q8TDG2 376 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 SCFD2Q8WU76 684 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 ARL8AQ96BM9 186 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 ZIM3Q96PE6 472 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 TAS2R14Q9NYV8 317 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 CTDP1Q9Y5B0 961 aaPredicted RBP12.17□□□□□ -0.46
CHMP3-209ENST00000494623 UBIAD1Q9Y5Z9 338 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 RPTORQ8N122 1335 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 A0A0A6YYK5 440 aaPredicted RBP12.17□□□□□ -0.46
CHMP3-209ENST00000494623 KRIT1O00522 736 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 CES2O00748 559 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 GCLMP48507 274 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 VAMP7P51809 220 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 RPS6P62753 249 aaKnown RBP12.17□□□□□ -0.46
CHMP3-209ENST00000494623 DNAJC21Q5F1R6 531 aaKnown RBP12.17□□□□□ -0.46
CHMP3-209ENST00000494623 NT5DC3Q86UY8 548 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 SYCE1Q8N0S2 351 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 ACCSQ96QU6 501 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.17□□□□□ -0.46
CHMP3-209ENST00000494623 TMEM206Q9H813 350 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 GPRC5CQ9NQ84 441 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 AMFRQ9UKV5 643 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 STXBP5LQ9Y2K9 1186 aa12.17□□□□□ -0.46
CHMP3-209ENST00000494623 GOLGA8KD6RF30 607 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 PGRMC1O00264 195 aaKnown RBP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 WDR46O15213 610 aaKnown RBP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 BUB1BO60566 1050 aaPredicted RBP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 ATP9AO75110 1047 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 CCDC172P0C7W6 258 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 PLS3P13797 630 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 YWHABP31946 246 aaKnown RBP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 PEX3P56589 373 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 MAP3K10Q02779 954 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 PPP3CAQ08209 521 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 SPP2Q13103 211 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 HLTFQ14527 1009 aaKnown RBP eCLIP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 CFAP58Q5T655 872 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 PCNX4Q63HM2 1172 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 OLIG1Q8TAK6 271 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 CTNNBL1Q8WYA6 563 aaPredicted RBP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 DDX47Q9H0S4 455 aaKnown RBP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 SUCLA2Q9P2R7 463 aaPredicted RBP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 NOC2LQ9Y3T9 749 aaKnown RBP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 GOLGA8IPA6NC78 632 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 GOLGA8JA6NMD2 632 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 SLC16A4O15374 487 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 EGFRP00533 1210 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 ITGA4P13612 1032 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 USP8P40818 1118 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 PPFIA1Q13136 1202 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 NNTQ13423 1086 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 UGCGQ16739 394 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 INTS8Q75QN2 995 aaKnown RBP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 HAUS6Q7Z4H7 955 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 DDX42Q86XP3 938 aaKnown RBP eCLIP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 PALB2Q86YC2 1186 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 LMO3Q8TAP4 145 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 ZBED3Q96IU2 234 aaPredicted RBP12.16□□□□□ -0.46
CHMP3-209ENST00000494623 SH3GL2Q99962 352 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 THAP2Q9H0W7 228 aa12.16□□□□□ -0.46
CHMP3-209ENST00000494623 SLC38A10Q9HBR0 1119 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms