RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 USP11P51784 963 aa14.23□□□□□ -0.13
SKA1-205ENST00000494518 SSRP1Q08945 709 aaKnown RBP14.23□□□□□ -0.13
SKA1-205ENST00000494518 TOB2Q14106 344 aaPredicted RBP14.23□□□□□ -0.13
SKA1-205ENST00000494518 CBX2Q14781 532 aaPredicted RBP14.23□□□□□ -0.13
SKA1-205ENST00000494518 IER5LQ5T953 404 aa14.23□□□□□ -0.13
SKA1-205ENST00000494518 PLA2G4FQ68DD2 849 aa14.23□□□□□ -0.13
SKA1-205ENST00000494518 PDE12Q6L8Q7 609 aaKnown RBP14.23□□□□□ -0.13
SKA1-205ENST00000494518 SYCE2Q6PIF2 218 aa14.23□□□□□ -0.13
SKA1-205ENST00000494518 PRSS33Q8NF86 280 aa14.23□□□□□ -0.13
SKA1-205ENST00000494518 PHOX2BQ99453 314 aa14.23□□□□□ -0.13
SKA1-205ENST00000494518 FDXACB1Q9BRP7 624 aaPredicted RBP14.23□□□□□ -0.13
SKA1-205ENST00000494518 S1PR5Q9H228 398 aa14.23□□□□□ -0.13
SKA1-205ENST00000494518 SPG21Q9NZD8 308 aa14.23□□□□□ -0.13
SKA1-205ENST00000494518 PCDHA4Q9UN74 947 aa14.23□□□□□ -0.13
SKA1-205ENST00000494518 LZTS1Q9Y250 596 aa14.23□□□□□ -0.13
SKA1-205ENST00000494518 DDX11L8A8MPP1 907 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 GABBR2O75899 941 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 WEE2P0C1S8 567 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 SRGAP2BP0DMP2 458 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 PPM1AP35813 382 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 KRT17Q04695 432 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 KCNC3Q14003 757 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 TARBP2Q15633 366 aaKnown RBP14.22□□□□□ -0.13
SKA1-205ENST00000494518 ZNF598Q86UK7 904 aaKnown RBP14.22□□□□□ -0.13
SKA1-205ENST00000494518 KSR1Q8IVT5 923 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 TRIM22Q8IYM9 498 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 BLIDQ8IZY5 108 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 SLC39A11Q8N1S5 342 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 FBXL16Q8N461 479 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 AUTS2Q8WXX7 1259 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 GCOM2Q9BZD3 368 aaPredicted RBP14.22□□□□□ -0.13
SKA1-205ENST00000494518 NGRNQ9NPE2 291 aaKnown RBP14.22□□□□□ -0.13
SKA1-205ENST00000494518 SH3GLB2Q9NR46 395 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 INPP5FQ9Y2H2 1132 aa14.22□□□□□ -0.13
SKA1-205ENST00000494518 USP34Q70CQ2 3546 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 A0A0U1RQF3 1178 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 MEIS3P2A8K0S8 358 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 CPLX1O14810 134 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 ZC3H11AO75152 810 aaKnown RBP eCLIP14.21□□□□□ -0.13
SKA1-205ENST00000494518 STBD1O95210 358 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 BCAR1P56945 870 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 SMC1AQ14683 1233 aaKnown RBP14.21□□□□□ -0.13
SKA1-205ENST00000494518 INF2Q27J81 1249 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 Q4G0T1 1027 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 XKR3Q5GH77 459 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 TWF2Q6IBS0 349 aaKnown RBP14.21□□□□□ -0.13
SKA1-205ENST00000494518 FAM43BQ6ZT52 329 aaPredicted RBP14.21□□□□□ -0.13
SKA1-205ENST00000494518 RUFY3Q7L099 469 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 ZBTB33Q86T24 672 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 TMEM173Q86WV6 379 aaPredicted RBP14.21□□□□□ -0.13
SKA1-205ENST00000494518 RHPN2Q8IUC4 686 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 SUGP1Q8IWZ8 645 aaKnown RBP14.21□□□□□ -0.13
SKA1-205ENST00000494518 NLRP4Q96MN2 994 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 CEP89Q96ST8 783 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 BMP2KQ9NSY1 1161 aaPredicted RBP14.21□□□□□ -0.13
SKA1-205ENST00000494518 DACT1Q9NYF0 836 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 SUCLA2Q9P2R7 463 aaPredicted RBP14.21□□□□□ -0.13
SKA1-205ENST00000494518 KCNJ14Q9UNX9 436 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 PIN4Q9Y237 131 aaKnown RBP14.21□□□□□ -0.13
SKA1-205ENST00000494518 HCFC2Q9Y5Z7 792 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 C2orf16Q68DN1 1984 aa14.21□□□□□ -0.13
SKA1-205ENST00000494518 FSD2A1L4K1 749 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 C2orf71A6NGG8 1288 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 SLC37A4O43826 429 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 CLASP2O75122 1294 aaKnown RBP14.2□□□□□ -0.14
SKA1-205ENST00000494518 REC8O95072 547 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 PHKA2P46019 1235 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 VCPP55072 806 aaKnown RBP14.2□□□□□ -0.14
SKA1-205ENST00000494518 EVCP57679 992 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 NPY5RQ15761 445 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 KANK3Q6NY19 840 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 TMEM184AQ6ZMB5 413 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 C12orf76Q8N812 135 aaPredicted RBP14.2□□□□□ -0.14
SKA1-205ENST00000494518 ETNPPLQ8TBG4 499 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 TMEM169Q96HH4 297 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 NIFKQ9BYG3 293 aaKnown RBP14.2□□□□□ -0.14
SKA1-205ENST00000494518 GBP3Q9H0R5 595 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 KCNH6Q9H252 994 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 POMKQ9H5K3 350 aa14.2□□□□□ -0.14
SKA1-205ENST00000494518 DDX25Q9UHL0 483 aaKnown RBP14.2□□□□□ -0.14
SKA1-205ENST00000494518 ZFHX2Q9C0A1 2572 aaPredicted RBP14.2□□□□□ -0.14
SKA1-205ENST00000494518 CYP3A7-CYP3A51PA0A087WV96 503 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.19□□□□□ -0.14
SKA1-205ENST00000494518 M0R2N6 131 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 EML1O00423 815 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 DEXIO95424 95 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 CXCL14O95715 111 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 EOMESO95936 686 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 PDGFBP01127 241 aaPredicted RBP14.19□□□□□ -0.14
SKA1-205ENST00000494518 SFPQP23246 707 aaKnown RBP eCLIP14.19□□□□□ -0.14
SKA1-205ENST00000494518 CYP3A7P24462 503 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 ALDH7A1P49419 539 aaKnown RBP14.19□□□□□ -0.14
SKA1-205ENST00000494518 DNM2P50570 870 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 NPEPPSP55786 919 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 SIGLEC14Q08ET2 396 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 PTPN21Q16825 1174 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 LETM2Q2VYF4 491 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 RARS2Q5T160 578 aaKnown RBP14.19□□□□□ -0.14
SKA1-205ENST00000494518 B3GNT9Q6UX72 402 aa14.19□□□□□ -0.14
SKA1-205ENST00000494518 ANO5Q75V66 913 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms