RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CDHR5Q9HBB8 845 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 CLEC1BQ9P126 229 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 NR2E1Q9Y466 385 aa13.02□□□□□ -0.33
COL6A3-213ENST00000493475 A0A0U1RQF3 1178 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 PDIA3P30101 505 aaKnown RBP13.01□□□□□ -0.33
COL6A3-213ENST00000493475 TECP42680 631 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 GPC3P51654 580 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 CCT2P78371 535 aaKnown RBP13.01□□□□□ -0.33
COL6A3-213ENST00000493475 CBX2Q14781 532 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-213ENST00000493475 NONOQ15233 471 aaKnown RBP eCLIP13.01□□□□□ -0.33
COL6A3-213ENST00000493475 Q4G0T1 1027 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 GLB1LQ6UWU2 654 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 RUFY3Q7L099 469 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 KRT25Q7Z3Z0 450 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 ZNF410Q86VK4 478 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 ECHDC2Q86YB7 292 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 TBCKQ8TEA7 893 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 SLC7A3Q8WY07 619 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 PBXIP1Q96AQ6 731 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 PGBD4Q96DM1 585 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 RPGRIP1Q96KN7 1286 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 AGXT2Q9BYV1 514 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 IRF2BPLQ9H1B7 796 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 SLKQ9H2G2 1235 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-213ENST00000493475 PPME1Q9Y570 386 aa13.01□□□□□ -0.33
COL6A3-213ENST00000493475 CCDC194A0A1B0GVG4 234 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 LOC730098B7Z3J9 87 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 PER2O15055 1255 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 CPA1P15085 419 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 GCFC2P16383 781 aaKnown RBP13□□□□□ -0.33
COL6A3-213ENST00000493475 EVCP57679 992 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 PSMC5P62195 406 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 RNASELQ05823 741 aaKnown RBP13□□□□□ -0.33
COL6A3-213ENST00000493475 ITIH3Q06033 890 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 NCBP1Q09161 790 aaKnown RBP13□□□□□ -0.33
COL6A3-213ENST00000493475 DSC3Q14574 896 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 MTERF2Q49AM1 385 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 TWF2Q6IBS0 349 aaKnown RBP13□□□□□ -0.33
COL6A3-213ENST00000493475 ELMSAN1Q6PJG2 1045 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 TMEM184AQ6ZMB5 413 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 TRIM67Q6ZTA4 783 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 HFE2Q6ZVN8 426 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 BMP8AQ7Z5Y6 402 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 BLIDQ8IZY5 108 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 LENG9Q96B70 501 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 ZNF274Q96GC6 653 aaPredicted RBP13□□□□□ -0.33
COL6A3-213ENST00000493475 NIFKQ9BYG3 293 aaKnown RBP13□□□□□ -0.33
COL6A3-213ENST00000493475 ADAMTS10Q9H324 1103 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 UNC45AQ9H3U1 944 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 CWH43Q9H720 699 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 DDX25Q9UHL0 483 aaKnown RBP13□□□□□ -0.33
COL6A3-213ENST00000493475 MYO7AQ13402 2215 aa13□□□□□ -0.33
COL6A3-213ENST00000493475 TMEM221A6NGB7 291 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 DDX11L8A8MPP1 907 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 M0R296 226 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 FSCN2O14926 492 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 EIF5BO60841 1220 aaKnown RBP12.99□□□□□ -0.33
COL6A3-213ENST00000493475 PTPN5P54829 565 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 ERVFC1P60507 584 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 NTRK3Q16288 839 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 ANKRD54Q6NXT1 300 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 DAGLBQ8NCG7 672 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 URGCPQ8TCY9 931 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 WASF1Q92558 559 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 RIPOR3Q96MK2 946 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 CASD1Q96PB1 797 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 BRMS1Q9HCU9 246 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 DZANK1Q9NVP4 752 aa12.99□□□□□ -0.33
COL6A3-213ENST00000493475 SUCLA2Q9P2R7 463 aaPredicted RBP12.99□□□□□ -0.33
COL6A3-213ENST00000493475 PIN4Q9Y237 131 aaKnown RBP12.99□□□□□ -0.33
COL6A3-213ENST00000493475 CYP3A7-CYP3A51PA0A087WV96 503 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 GAS2O43903 313 aaKnown RBP12.98□□□□□ -0.33
COL6A3-213ENST00000493475 ZNF862O60290 1169 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 PSMD10O75832 226 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 BAG4O95429 457 aaKnown RBP12.98□□□□□ -0.33
COL6A3-213ENST00000493475 GLP2RO95838 553 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 CYP3A7P24462 503 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 MTHFRP42898 656 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 POLGP54098 1239 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-213ENST00000493475 ZXDAP98168 799 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 SIGLEC14Q08ET2 396 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 LLGL2Q6P1M3 1020 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 OTUD6AQ7L8S5 288 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 CATSPER4Q7RTX7 472 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 PPFIBP1Q86W92 1011 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 RHPN2Q8IUC4 686 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 LINC01465Q8N7H1 131 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 MRPL43Q8N983 215 aaKnown RBP12.98□□□□□ -0.33
COL6A3-213ENST00000493475 HELQQ8TDG4 1101 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 TCP11Q8WWU5 503 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 FBXL18Q96ME1 805 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 FAM20AQ96MK3 541 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 FAM193BQ96PV7 902 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-213ENST00000493475 TRAIPQ9BWF2 469 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 TM6SF1Q9BZW5 370 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 NCOA5Q9HCD5 579 aaKnown RBP12.98□□□□□ -0.33
COL6A3-213ENST00000493475 ZSWIM6Q9HCJ5 1215 aa12.98□□□□□ -0.33
COL6A3-213ENST00000493475 MYH9P35579 1960 aaKnown RBP12.98□□□□□ -0.33
COL6A3-213ENST00000493475 RBAK-RBAKDNI3L0D1 243 aa12.97□□□□□ -0.33
COL6A3-213ENST00000493475 ZC3H11AO75152 810 aaKnown RBP eCLIP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms