RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 ARL2P36404 184 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 MAPK7Q13164 816 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 CAVIN1Q6NZI2 390 aaKnown RBP19.02■□□□□ 0.64
LIME1-208ENST00000493265 TAF2Q6P1X5 1199 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 ANKRD33Q7Z3H0 272 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 RSPH3Q86UC2 560 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 DAW1Q8N136 415 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 MYCT1Q8N699 235 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 LINC01465Q8N7H1 131 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 BSNDQ8WZ55 320 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 DHX38Q92620 1227 aaKnown RBP19.02■□□□□ 0.64
LIME1-208ENST00000493265 KIFAP3Q92845 792 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 TRIM43Q96BQ3 446 aaPredicted RBP19.02■□□□□ 0.64
LIME1-208ENST00000493265 NLRP4Q96MN2 994 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 TIPINQ9BVW5 301 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 TBC1D7Q9P0N9 293 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 ODF2LQ9ULJ1 636 aa19.02■□□□□ 0.64
LIME1-208ENST00000493265 CCDC169A6NNP5 214 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 RBAK-RBAKDNI3L0D1 243 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 CD4P01730 458 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 RPN1P04843 607 aaKnown RBP19.01■□□□□ 0.63
LIME1-208ENST00000493265 GLRA2P23416 452 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 PEX3P56589 373 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 FAAP100Q0VG06 881 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 LAMTOR4Q0VGL1 99 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 DPYDQ12882 1025 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 KIZQ2M2Z5 673 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 C1orf53Q5VUE5 145 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 CCDC65Q8IXS2 484 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 IFT74Q96LB3 600 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 CDX2Q99626 313 aaPredicted RBP19.01■□□□□ 0.63
LIME1-208ENST00000493265 COL4A3BPQ9Y5P4 624 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 EYSQ5T1H1 3165 aa19.01■□□□□ 0.63
LIME1-208ENST00000493265 LRRIQ4A6NIV6 560 aa19■□□□□ 0.63
LIME1-208ENST00000493265 TRAK2O60296 914 aa19■□□□□ 0.63
LIME1-208ENST00000493265 SMC2O95347 1197 aa19■□□□□ 0.63
LIME1-208ENST00000493265 NLRP11P59045 1033 aaKnown RBP19■□□□□ 0.63
LIME1-208ENST00000493265 HERC4Q5GLZ8 1057 aaPredicted RBP19■□□□□ 0.63
LIME1-208ENST00000493265 ODR4Q5SWX8 454 aa19■□□□□ 0.63
LIME1-208ENST00000493265 SFR1Q86XK3 245 aa19■□□□□ 0.63
LIME1-208ENST00000493265 NLRP7Q8WX94 980 aa19■□□□□ 0.63
LIME1-208ENST00000493265 HPS3Q969F9 1004 aa19■□□□□ 0.63
LIME1-208ENST00000493265 SMARCE1Q969G3 411 aa19■□□□□ 0.63
LIME1-208ENST00000493265 TOX2Q96NM4 488 aa19■□□□□ 0.63
LIME1-208ENST00000493265 PARVGQ9HBI0 331 aa19■□□□□ 0.63
LIME1-208ENST00000493265 TMEM39AQ9NV64 488 aa19■□□□□ 0.63
LIME1-208ENST00000493265 M0QZ92 97 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 CLTBP09497 229 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 PLS3P13797 630 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 MRPS6P82932 125 aaKnown RBP18.99■□□□□ 0.63
LIME1-208ENST00000493265 COASYQ13057 564 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 DMP1Q13316 513 aaPredicted RBP18.99■□□□□ 0.63
LIME1-208ENST00000493265 CAPSQ13938 189 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 MXD4Q14582 209 aaPredicted RBP18.99■□□□□ 0.63
LIME1-208ENST00000493265 KLHL40Q2TBA0 621 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 SKOR2Q2VWA4 1001 aaPredicted RBP18.99■□□□□ 0.63
LIME1-208ENST00000493265 ISM2Q6H9L7 571 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 UNC13DQ70J99 1090 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 CCDC155Q8N6L0 562 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 RNF149Q8NC42 400 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 KIFC3Q9BVG8 833 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 PPP1R12CQ9BZL4 782 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 SEMA6BQ9H3T3 888 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 EXOC1Q9NV70 894 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 TMEM63CQ9P1W3 806 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 PCDHA5Q9Y5H7 936 aa18.99■□□□□ 0.63
LIME1-208ENST00000493265 A0A087WZ62 844 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 BIN1O00499 593 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 SLC16A4O15374 487 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 KLRC4O43908 158 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 MYL1P05976 194 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 GAP43P17677 238 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 ITGB8P26012 769 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 NPTX2P47972 431 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 GPC3P51654 580 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 TFDP1Q14186 410 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 TRIM71Q2Q1W2 868 aaKnown RBP18.98■□□□□ 0.63
LIME1-208ENST00000493265 KMT5BQ4FZB7 885 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 CCDC183Q5T5S1 534 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 ZNF618Q5T7W0 954 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 CNNM4Q6P4Q7 775 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 NME8Q8N427 588 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 MAFAQ8NHW3 353 aaPredicted RBP18.98■□□□□ 0.63
LIME1-208ENST00000493265 DEPTORQ8TB45 409 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 MYLIPQ8WY64 445 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 CCDC47Q96A33 483 aaKnown RBP18.98■□□□□ 0.63
LIME1-208ENST00000493265 FDXACB1Q9BRP7 624 aaPredicted RBP18.98■□□□□ 0.63
LIME1-208ENST00000493265 CDHR5Q9HBB8 845 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 KMT5AQ9NQR1 393 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 LARSQ9P2J5 1176 aaKnown RBP18.98■□□□□ 0.63
LIME1-208ENST00000493265 CDY2AQ9Y6F7 541 aa18.98■□□□□ 0.63
LIME1-208ENST00000493265 ASAP2O43150 1006 aa18.97■□□□□ 0.63
LIME1-208ENST00000493265 CSDE1O75534 798 aaKnown RBP18.97■□□□□ 0.63
LIME1-208ENST00000493265 CKBP12277 381 aa18.97■□□□□ 0.63
LIME1-208ENST00000493265 NMT1P30419 496 aaKnown RBP18.97■□□□□ 0.63
LIME1-208ENST00000493265 ZNF131P52739 623 aa18.97■□□□□ 0.63
LIME1-208ENST00000493265 SMAD3P84022 425 aaKnown RBP18.97■□□□□ 0.63
LIME1-208ENST00000493265 BFSP2Q13515 415 aa18.97■□□□□ 0.63
LIME1-208ENST00000493265 PPP2R5AQ15172 486 aa18.97■□□□□ 0.63
LIME1-208ENST00000493265 FAM178BQ8IXR5 827 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms