RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 CBFA2T2O43439 604 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 GCNT3O95395 438 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 C22orf31O95567 290 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 PIGRP01833 764 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 INHAP05111 366 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 C6orf222P0C671 652 aaPredicted RBP10.63□□□□□ -0.71
USP54-214ENST00000492357 NPTX2P47972 431 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 PSEN2P49810 448 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 ADAM17P78536 824 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 MFSD10Q14728 455 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 GJC2Q5T442 439 aaPredicted RBP10.63□□□□□ -0.71
USP54-214ENST00000492357 FAM102BQ5T8I3 360 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 CDCA2Q69YH5 1023 aaPredicted RBP10.63□□□□□ -0.71
USP54-214ENST00000492357 CCSAPQ6IQ19 270 aaPredicted RBP10.63□□□□□ -0.71
USP54-214ENST00000492357 TAF2Q6P1X5 1199 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 NFRKBQ6P4R8 1299 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.63□□□□□ -0.71
USP54-214ENST00000492357 RPAINQ86UA6 219 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 LUZP1Q86V48 1076 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 NME8Q8N427 588 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 TMEM161BQ8NDZ6 487 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 KAT2BQ92831 832 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 MRFAP1L1Q96HT8 127 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 PRIMPOLQ96LW4 560 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 MAP7D2Q96T17 732 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 GBP3Q9H0R5 595 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 POLR3FQ9H1D9 316 aaPredicted RBP10.63□□□□□ -0.71
USP54-214ENST00000492357 KCTD10Q9H3F6 313 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 RNPEPQ9H4A4 650 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 ZHX3Q9H4I2 956 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 RTN4Q9NQC3 1192 aaKnown RBP10.63□□□□□ -0.71
USP54-214ENST00000492357 KMT5AQ9NQR1 393 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 TBC1D7Q9P0N9 293 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 KAT6AQ92794 2004 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 FRMPD3Q5JV73 1810 aa10.63□□□□□ -0.71
USP54-214ENST00000492357 NPHP3-ACAD11A0A0J9YXS1 232 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 RSPH10B2B2RC85 870 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 K7ENM7 598 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 SLC16A3O15427 465 aaKnown RBP10.62□□□□□ -0.71
USP54-214ENST00000492357 CAND2O75155 1236 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 RSPH10BP0C881 870 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 ELNP15502 786 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 CNGA1P29973 690 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 PEX3P56589 373 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 MCCD1P59942 119 aaPredicted RBP10.62□□□□□ -0.71
USP54-214ENST00000492357 CAP1Q01518 475 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 POU5F1Q01860 360 aaKnown RBP10.62□□□□□ -0.71
USP54-214ENST00000492357 RAD51AP2Q09MP3 1159 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 GRIK4Q16099 956 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 KIAA0753Q2KHM9 967 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 GNASQ5JWF2 1037 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 TMEM63BQ5T3F8 832 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 SMYD5Q6GMV2 418 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 ISM2Q6H9L7 571 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 ZPBP2Q6X784 338 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 CTU1Q7Z7A3 348 aaKnown RBP10.62□□□□□ -0.71
USP54-214ENST00000492357 FILIP1Q7Z7B0 1213 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 TRIM50Q86XT4 487 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 ZBTB8OSQ8IWT0 167 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 CSGALNACT2Q8N6G5 542 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 RNF214Q8ND24 703 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 INO80BQ9C086 356 aaPredicted RBP10.62□□□□□ -0.71
USP54-214ENST00000492357 METTL14Q9HCE5 456 aaKnown RBP10.62□□□□□ -0.71
USP54-214ENST00000492357 KIAA1586Q9HCI6 787 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 CTNND2Q9UQB3 1225 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 TELO2Q9Y4R8 837 aa10.62□□□□□ -0.71
USP54-214ENST00000492357 A0A087WWV3 80 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 CETN3O15182 167 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 SORBS3O60504 671 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 TPM2P07951 284 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 ZNF286BP0CG31 522 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 SMIM10L2AP0DMW4 78 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 SMIM10L2BP0DMW5 78 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 GARTP22102 1010 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 GLRA2P23416 452 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 KLRC1P26715 233 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 CDC25BP30305 580 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 PHKA2P46019 1235 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 CTCFP49711 727 aaPredicted RBP10.61□□□□□ -0.71
USP54-214ENST00000492357 STRN3Q13033 797 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 FAM187BQ17R55 369 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 SLFN12LQ6IEE8 588 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 KLHL10Q6JEL2 608 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 FBXO46Q6PJ61 603 aaPredicted RBP10.61□□□□□ -0.71
USP54-214ENST00000492357 MTHFD1LQ6UB35 978 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 SMYD4Q8IYR2 804 aaPredicted RBP10.61□□□□□ -0.71
USP54-214ENST00000492357 C7orf31Q8N865 590 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 DEPTORQ8TB45 409 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 IQCDQ96DY2 449 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 MED15Q96RN5 788 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.61□□□□□ -0.71
USP54-214ENST00000492357 SEMA6BQ9H3T3 888 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 PAK6Q9NQU5 681 aaPredicted RBP10.61□□□□□ -0.71
USP54-214ENST00000492357 FANCLQ9NW38 375 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 MAGEC2Q9UBF1 373 aaPredicted RBP10.61□□□□□ -0.71
USP54-214ENST00000492357 LIMA1Q9UHB6 759 aaKnown RBP10.61□□□□□ -0.71
USP54-214ENST00000492357 TBX20Q9UMR3 447 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 PTCH2Q9Y6C5 1203 aa10.61□□□□□ -0.71
USP54-214ENST00000492357 C17orf102A2RUQ5 167 aa10.6□□□□□ -0.71
USP54-214ENST00000492357 DENND3A2RUS2 1198 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms