RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CYP27A1Q02318 531 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 CKAP4Q07065 602 aaKnown RBP11.74□□□□□ -0.53
USP4-214ENST00000491791 KCNA1Q09470 495 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 BAATQ14032 418 aaPredicted RBP11.74□□□□□ -0.53
USP4-214ENST00000491791 NAB2Q15742 525 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 ASIC2Q16515 512 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 ARHGEF16Q5VV41 709 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 PRAMEF18Q5VWM3 479 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 WDR93Q6P2C0 686 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 LBX2Q6XYB7 198 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 MOB2Q70IA6 237 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 DNERQ8NFT8 737 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 UBE2Q2Q8WVN8 375 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 ZKSCAN4Q969J2 545 aaPredicted RBP11.74□□□□□ -0.53
USP4-214ENST00000491791 ACCSQ96QU6 501 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 PARD6BQ9BYG5 372 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 DEF6Q9H4E7 631 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 BCAS3Q9H6U6 928 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 PDLIM7Q9NR12 457 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 PCDH10Q9P2E7 1040 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 RNF14Q9UBS8 474 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 RIPK3Q9Y572 518 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 PCDHA10Q9Y5I2 948 aa11.74□□□□□ -0.53
USP4-214ENST00000491791 COL11A1P12107 1806 aaPredicted RBP11.74□□□□□ -0.53
USP4-214ENST00000491791 SFI1A8K8P3 1242 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 TNRC18O15417 2968 aaPredicted RBP11.73□□□□□ -0.53
USP4-214ENST00000491791 ATP9AO75110 1047 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 USP2O75604 605 aaPredicted RBP11.73□□□□□ -0.53
USP4-214ENST00000491791 TBC1D8O95759 1140 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 ALDH1A1P00352 501 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 ATP1A1P05023 1023 aaKnown RBP11.73□□□□□ -0.53
USP4-214ENST00000491791 KCNA2P16389 499 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 FERP16591 822 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 TCP1P17987 556 aaKnown RBP11.73□□□□□ -0.53
USP4-214ENST00000491791 EIF2AK2P19525 551 aaKnown RBP11.73□□□□□ -0.53
USP4-214ENST00000491791 SLC9A1P19634 815 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 FMO5P49326 533 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 TMEM132BQ14DG7 1078 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 ZC2HC1CQ53FD0 456 aaPredicted RBP11.73□□□□□ -0.53
USP4-214ENST00000491791 SMYD5Q6GMV2 418 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 TMCO3Q6UWJ1 677 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 INTS8Q75QN2 995 aaKnown RBP11.73□□□□□ -0.53
USP4-214ENST00000491791 ZNF296Q8WUU4 475 aaPredicted RBP11.73□□□□□ -0.53
USP4-214ENST00000491791 UBXN6Q9BZV1 441 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 ACAD9Q9H845 621 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 ANKZF1Q9H8Y5 726 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 NLRC4Q9NPP4 1024 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 CYP39A1Q9NYL5 469 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 TMOD4Q9NZQ9 345 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 SNX12Q9UMY4 172 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 SCAF8Q9UPN6 1271 aaKnown RBP11.73□□□□□ -0.53
USP4-214ENST00000491791 FRMD4BQ9Y2L6 1034 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 PCDHGC5Q9Y5F6 944 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 FHOD1Q9Y613 1164 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 DUSP10Q9Y6W6 482 aa11.73□□□□□ -0.53
USP4-214ENST00000491791 MYH11P35749 1972 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 A0A0A6YYK5 440 aaPredicted RBP11.72□□□□□ -0.53
USP4-214ENST00000491791 SPDYE16A6NNV3 312 aaPredicted RBP11.72□□□□□ -0.53
USP4-214ENST00000491791 GPR25O00155 361 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 CES2O00748 559 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 IRF6O14896 467 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 N4BP1O75113 896 aaKnown RBP11.72□□□□□ -0.53
USP4-214ENST00000491791 ATG7O95352 703 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 MCM3P25205 808 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 HMGCS2P54868 508 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 KLHL30Q0D2K2 578 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 MKRN3Q13064 507 aaKnown RBP11.72□□□□□ -0.53
USP4-214ENST00000491791 TEX35Q5T0J7 233 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 SNRNP48Q6IEG0 339 aaKnown RBP11.72□□□□□ -0.53
USP4-214ENST00000491791 CC2D1AQ6P1N0 951 aaPredicted RBP11.72□□□□□ -0.53
USP4-214ENST00000491791 OTUD6AQ7L8S5 288 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 KIFAP3Q92845 792 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 WNK4Q96J92 1243 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 NOX5Q96PH1 765 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 ALS2CR12Q96Q35 445 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 CRACR2AQ9BSW2 395 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 SYT11Q9BT88 431 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 STK33Q9BYT3 514 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 FBXO40Q9UH90 709 aa11.72□□□□□ -0.53
USP4-214ENST00000491791 A0A087X0T9 212 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 H0YCG3 227 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 MAP2K7O14733 419 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 CLIC2O15247 247 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 FKTNO75072 461 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 RGS20O76081 388 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 CCDC172P0C7W6 258 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 FAM228BP0C875 321 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 NPEPPSP55786 919 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 INHBEP58166 350 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 GFPT1Q06210 699 aaPredicted RBP11.71□□□□□ -0.53
USP4-214ENST00000491791 BFSP1Q12934 665 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 PRKG1Q13976 671 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 TCEAL1Q15170 157 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 GNPTABQ3T906 1256 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 PRPF38BQ5VTL8 546 aaKnown RBP11.71□□□□□ -0.53
USP4-214ENST00000491791 IQCEQ6IPM2 695 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 FBXO46Q6PJ61 603 aaPredicted RBP11.71□□□□□ -0.53
USP4-214ENST00000491791 ABHD15Q6UXT9 468 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 NSMFQ6X4W1 530 aa11.71□□□□□ -0.53
USP4-214ENST00000491791 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms