RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 HLA-CQ95604 372 aa16.83■□□□□ 0.28
USP39-217ENST00000491659 TMEM143Q96AN5 459 aa16.83■□□□□ 0.28
USP39-217ENST00000491659 PLXNA4Q9HCM2 1894 aa16.83■□□□□ 0.28
USP39-217ENST00000491659 CHST12Q9NRB3 414 aa16.83■□□□□ 0.28
USP39-217ENST00000491659 ZBTB39O15060 712 aa16.82■□□□□ 0.28
USP39-217ENST00000491659 DGAT1O75907 488 aa16.82■□□□□ 0.28
USP39-217ENST00000491659 FGFR1P11362 822 aa16.82■□□□□ 0.28
USP39-217ENST00000491659 GJB2P29033 226 aa16.82■□□□□ 0.28
USP39-217ENST00000491659 FAM189BP81408 668 aa16.82■□□□□ 0.28
USP39-217ENST00000491659 NAALADL2Q58DX5 795 aa16.82■□□□□ 0.28
USP39-217ENST00000491659 MCTP1Q6DN14 999 aa16.82■□□□□ 0.28
USP39-217ENST00000491659 ECHDC2Q86YB7 292 aa16.82■□□□□ 0.28
USP39-217ENST00000491659 ABI1Q8IZP0 508 aa16.82■□□□□ 0.28
USP39-217ENST00000491659 PRPF31Q8WWY3 499 aaKnown RBP16.82■□□□□ 0.28
USP39-217ENST00000491659 NSUN3Q9H649 340 aaKnown RBP16.82■□□□□ 0.28
USP39-217ENST00000491659 TUFT1Q9NNX1 390 aa16.82■□□□□ 0.28
USP39-217ENST00000491659 AAASQ9NRG9 546 aa16.82■□□□□ 0.28
USP39-217ENST00000491659 PIN4Q9Y237 131 aaKnown RBP16.82■□□□□ 0.28
USP39-217ENST00000491659 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.82■□□□□ 0.28
USP39-217ENST00000491659 H3BQV1 296 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 ASAP2O43150 1006 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 SRGAP2CP0DJJ0 459 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 RARRES1P49788 294 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 TFF2Q03403 129 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 LAMTOR4Q0VGL1 99 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 NBR1Q14596 966 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 HAUS3Q68CZ6 603 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 TWF2Q6IBS0 349 aaKnown RBP16.81■□□□□ 0.28
USP39-217ENST00000491659 SRGAP1Q7Z6B7 1085 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 FERMT3Q86UX7 667 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 RNF169Q8NCN4 708 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 TMEM117Q9H0C3 514 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 SMC3Q9UQE7 1217 aa16.81■□□□□ 0.28
USP39-217ENST00000491659 REV3LO60673 3130 aa16.8■□□□□ 0.28
USP39-217ENST00000491659 A0A0U1RQF3 1178 aa16.8■□□□□ 0.28
USP39-217ENST00000491659 GRM6O15303 877 aa16.8■□□□□ 0.28
USP39-217ENST00000491659 XRCC6P12956 609 aaKnown RBP eCLIP16.8■□□□□ 0.28
USP39-217ENST00000491659 PHKA2P46019 1235 aa16.8■□□□□ 0.28
USP39-217ENST00000491659 TFDP1Q14186 410 aa16.8■□□□□ 0.28
USP39-217ENST00000491659 MXD4Q14582 209 aaPredicted RBP16.8■□□□□ 0.28
USP39-217ENST00000491659 LRRC43Q8N309 656 aa16.8■□□□□ 0.28
USP39-217ENST00000491659 RNF149Q8NC42 400 aa16.8■□□□□ 0.28
USP39-217ENST00000491659 PIGOQ8TEQ8 1089 aa16.8■□□□□ 0.28
USP39-217ENST00000491659 POLR3CQ9BUI4 534 aaPredicted RBP16.8■□□□□ 0.28
USP39-217ENST00000491659 IFT122Q9HBG6 1241 aa16.8■□□□□ 0.28
USP39-217ENST00000491659 ALG13Q9NP73 1137 aaKnown RBP16.8■□□□□ 0.28
USP39-217ENST00000491659 XPNPEP1Q9NQW7 623 aa16.8■□□□□ 0.28
USP39-217ENST00000491659 PCDHB12Q9Y5F1 795 aa16.8■□□□□ 0.28
USP39-217ENST00000491659 USO1O60763 962 aaKnown RBP16.79■□□□□ 0.28
USP39-217ENST00000491659 MED24O75448 989 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 CSPG5O95196 566 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 EOMESO95936 686 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 SPATA31C1P0DKV0 1188 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 SKIP12755 728 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 LAG3P18627 525 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 FXR2P51116 673 aaKnown RBP eCLIP16.79■□□□□ 0.28
USP39-217ENST00000491659 RAB27AP51159 221 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 CSPP1Q1MSJ5 1256 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 TCEAL5Q5H9L2 206 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 CATSPER3Q86XQ3 398 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 KLHL23Q8NBE8 558 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 NACC1Q96RE7 527 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 MRPL9Q9BYD2 267 aaKnown RBP16.79■□□□□ 0.28
USP39-217ENST00000491659 RAB34Q9BZG1 259 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 UBE2ZQ9H832 354 aaPredicted RBP16.79■□□□□ 0.28
USP39-217ENST00000491659 AGPAT5Q9NUQ2 364 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 PLAGL2Q9UPG8 496 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 PCDHB6Q9Y5E3 794 aa16.79■□□□□ 0.28
USP39-217ENST00000491659 LAD1O00515 517 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 ERLIN2O94905 339 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 ITGB1P05556 798 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 MUTP22033 750 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 RPA1P27694 616 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 TOB1P50616 345 aaPredicted RBP16.78■□□□□ 0.28
USP39-217ENST00000491659 PTGDRQ13258 359 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 RILPL1Q5EBL4 403 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 POTEGQ6S5H5 508 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 COLGALT1Q8NBJ5 622 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 ADAMTS19Q8TE59 1207 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 CASD1Q96PB1 797 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 TRAIPQ9BWF2 469 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 BACH2Q9BYV9 841 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 FAM105AQ9NUU6 356 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 RNF19AQ9NV58 838 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 TYW1Q9NV66 732 aaKnown RBP16.78■□□□□ 0.28
USP39-217ENST00000491659 LRWD1Q9UFC0 647 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 DBR1Q9UK59 544 aaKnown RBP16.78■□□□□ 0.28
USP39-217ENST00000491659 STK24Q9Y6E0 443 aa16.78■□□□□ 0.28
USP39-217ENST00000491659 TCF20Q9UGU0 1960 aaKnown RBP16.78■□□□□ 0.28
USP39-217ENST00000491659 ATF7P17544 494 aaPredicted RBP16.77■□□□□ 0.28
USP39-217ENST00000491659 CCT6AP40227 531 aaKnown RBP16.77■□□□□ 0.28
USP39-217ENST00000491659 KCNQ1P51787 676 aa16.77■□□□□ 0.28
USP39-217ENST00000491659 PCBP1Q15365 356 aaKnown RBP eCLIP16.77■□□□□ 0.28
USP39-217ENST00000491659 CLLU1OSQ5K130 101 aa16.77■□□□□ 0.28
USP39-217ENST00000491659 ZNF598Q86UK7 904 aaKnown RBP16.77■□□□□ 0.28
USP39-217ENST00000491659 THNSL1Q8IYQ7 743 aa16.77■□□□□ 0.28
USP39-217ENST00000491659 C4orf32Q8N8J7 132 aa16.77■□□□□ 0.28
USP39-217ENST00000491659 MCPH1Q8NEM0 835 aa16.77■□□□□ 0.28
USP39-217ENST00000491659 HELQQ8TDG4 1101 aa16.77■□□□□ 0.28
USP39-217ENST00000491659 RSPH1Q8WYR4 309 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms