RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 ZNF598Q86UK7 904 aaKnown RBP17.64■□□□□ 0.41
SMPD4-220ENST00000491319 RHPN2Q8IUC4 686 aa17.64■□□□□ 0.41
SMPD4-220ENST00000491319 HELQQ8TDG4 1101 aa17.64■□□□□ 0.41
SMPD4-220ENST00000491319 MRPS27Q92552 414 aaKnown RBP17.64■□□□□ 0.41
SMPD4-220ENST00000491319 FAM122AQ96E09 287 aa17.64■□□□□ 0.41
SMPD4-220ENST00000491319 FDXACB1Q9BRP7 624 aaPredicted RBP17.64■□□□□ 0.41
SMPD4-220ENST00000491319 GCOM2Q9BZD3 368 aaPredicted RBP17.64■□□□□ 0.41
SMPD4-220ENST00000491319 FAM205CA6NFA0 338 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 MAFO75444 373 aaPredicted RBP17.63■□□□□ 0.41
SMPD4-220ENST00000491319 XBP1P17861 261 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 DNM2P50570 870 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 AK2P54819 239 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 PLCB3Q01970 1234 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 DUSP6Q16828 381 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 EARS2Q5JPH6 523 aaKnown RBP17.63■□□□□ 0.41
SMPD4-220ENST00000491319 POTEDQ86YR6 584 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 KSR1Q8IVT5 923 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 ZNF558Q96NG5 402 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 TCF25Q9BQ70 676 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 ENTPD7Q9NQZ7 604 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 DACT1Q9NYF0 836 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 SUCLA2Q9P2R7 463 aaPredicted RBP17.63■□□□□ 0.41
SMPD4-220ENST00000491319 WRAP73Q9P2S5 460 aaPredicted RBP17.63■□□□□ 0.41
SMPD4-220ENST00000491319 MUTYHQ9UIF7 546 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 LZTS1Q9Y250 596 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 USP15Q9Y4E8 981 aaPredicted RBP17.63■□□□□ 0.41
SMPD4-220ENST00000491319 MUC6Q6W4X9 2439 aa17.63■□□□□ 0.41
SMPD4-220ENST00000491319 TDRD15B5MCY1 1934 aaKnown RBP17.62■□□□□ 0.41
SMPD4-220ENST00000491319 CCNT1O60563 726 aaKnown RBP17.62■□□□□ 0.41
SMPD4-220ENST00000491319 GCFC2P16383 781 aaKnown RBP17.62■□□□□ 0.41
SMPD4-220ENST00000491319 SFPQP23246 707 aaKnown RBP eCLIP17.62■□□□□ 0.41
SMPD4-220ENST00000491319 NPEPPSP55786 919 aa17.62■□□□□ 0.41
SMPD4-220ENST00000491319 PPP4R3AQ6IN85 833 aa17.62■□□□□ 0.41
SMPD4-220ENST00000491319 PDE12Q6L8Q7 609 aaKnown RBP17.62■□□□□ 0.41
SMPD4-220ENST00000491319 ZNF410Q86VK4 478 aa17.62■□□□□ 0.41
SMPD4-220ENST00000491319 HAS1Q92839 578 aa17.62■□□□□ 0.41
SMPD4-220ENST00000491319 FAM20AQ96MK3 541 aa17.62■□□□□ 0.41
SMPD4-220ENST00000491319 NLRP4Q96MN2 994 aa17.62■□□□□ 0.41
SMPD4-220ENST00000491319 CYP26B1Q9NR63 512 aa17.62■□□□□ 0.41
SMPD4-220ENST00000491319 ORC3Q9UBD5 711 aaPredicted RBP17.62■□□□□ 0.41
SMPD4-220ENST00000491319 TRIOO75962 3097 aa17.61■□□□□ 0.41
SMPD4-220ENST00000491319 HIDE1A8MVS5 230 aa17.61■□□□□ 0.41
SMPD4-220ENST00000491319 LARGE1O95461 756 aa17.61■□□□□ 0.41
SMPD4-220ENST00000491319 EOMESO95936 686 aa17.61■□□□□ 0.41
SMPD4-220ENST00000491319 PPM1AP35813 382 aa17.61■□□□□ 0.41
SMPD4-220ENST00000491319 PHKA2P46019 1235 aa17.61■□□□□ 0.41
SMPD4-220ENST00000491319 QARSP47897 775 aaKnown RBP17.61■□□□□ 0.41
SMPD4-220ENST00000491319 ANAPC15P60006 121 aa17.61■□□□□ 0.41
SMPD4-220ENST00000491319 CDC42EP1Q00587 391 aa17.61■□□□□ 0.41
SMPD4-220ENST00000491319 TWF2Q6IBS0 349 aaKnown RBP17.61■□□□□ 0.41
SMPD4-220ENST00000491319 RNF135Q8IUD6 432 aa17.61■□□□□ 0.41
SMPD4-220ENST00000491319 ZNF579Q8NAF0 562 aaKnown RBP17.61■□□□□ 0.41
SMPD4-220ENST00000491319 LPPQ93052 612 aa17.61■□□□□ 0.41
SMPD4-220ENST00000491319 CDCA3Q99618 268 aaPredicted RBP17.61■□□□□ 0.41
SMPD4-220ENST00000491319 BMP2KQ9NSY1 1161 aaPredicted RBP17.61■□□□□ 0.41
SMPD4-220ENST00000491319 PIN4Q9Y237 131 aaKnown RBP17.61■□□□□ 0.41
SMPD4-220ENST00000491319 FSD2A1L4K1 749 aa17.6■□□□□ 0.41
SMPD4-220ENST00000491319 MEIS3P2A8K0S8 358 aa17.6■□□□□ 0.41
SMPD4-220ENST00000491319 P4HBP07237 508 aaKnown RBP17.6■□□□□ 0.41
SMPD4-220ENST00000491319 FDPSP14324 419 aaKnown RBP17.6■□□□□ 0.41
SMPD4-220ENST00000491319 NR5A1Q13285 461 aa17.6■□□□□ 0.41
SMPD4-220ENST00000491319 KCNC3Q14003 757 aa17.6■□□□□ 0.41
SMPD4-220ENST00000491319 LONRF3Q496Y0 759 aa17.6■□□□□ 0.41
SMPD4-220ENST00000491319 SLC39A11Q8N1S5 342 aa17.6■□□□□ 0.41
SMPD4-220ENST00000491319 NECAB1Q8N987 351 aa17.6■□□□□ 0.41
SMPD4-220ENST00000491319 LXNQ9BS40 222 aa17.6■□□□□ 0.41
SMPD4-220ENST00000491319 MRPL9Q9BYD2 267 aaKnown RBP17.6■□□□□ 0.41
SMPD4-220ENST00000491319 IFT122Q9HBG6 1241 aa17.6■□□□□ 0.41
SMPD4-220ENST00000491319 CHST12Q9NRB3 414 aa17.6■□□□□ 0.41
SMPD4-220ENST00000491319 SPG21Q9NZD8 308 aa17.6■□□□□ 0.41
SMPD4-220ENST00000491319 PUF60Q9UHX1 559 aaKnown RBP17.6■□□□□ 0.41
SMPD4-220ENST00000491319 ARIH1Q9Y4X5 557 aaPredicted RBP17.6■□□□□ 0.41
SMPD4-220ENST00000491319 NT5C1B-RDH14C9J2C7 533 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 TBX3O15119 743 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 POLGP54098 1239 aaPredicted RBP17.59■□□□□ 0.41
SMPD4-220ENST00000491319 KRT17Q04695 432 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 SPIRE1Q08AE8 756 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 ANKRD1Q15327 319 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 ME3Q16798 604 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 HERC4Q5GLZ8 1057 aaPredicted RBP17.59■□□□□ 0.41
SMPD4-220ENST00000491319 NCAPH2Q6IBW4 605 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 LLGL2Q6P1M3 1020 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 CATSPER4Q7RTX7 472 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 SLC7A3Q8WY07 619 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 CEP170P1Q96L14 293 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 JPH2Q9BR39 696 aaPredicted RBP17.59■□□□□ 0.41
SMPD4-220ENST00000491319 TRAIPQ9BWF2 469 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 INO80BQ9C086 356 aaPredicted RBP17.59■□□□□ 0.41
SMPD4-220ENST00000491319 DHX33Q9H6R0 707 aaKnown RBP17.59■□□□□ 0.41
SMPD4-220ENST00000491319 FAM105AQ9NUU6 356 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 RGL1Q9NZL6 768 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 COL4A3BPQ9Y5P4 624 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 MYO10Q9HD67 2058 aa17.59■□□□□ 0.41
SMPD4-220ENST00000491319 LOC730098B7Z3J9 87 aa17.58■□□□□ 0.4
SMPD4-220ENST00000491319 MARCH6O60337 910 aa17.58■□□□□ 0.4
SMPD4-220ENST00000491319 DKC1O60832 514 aaKnown RBP eCLIP17.58■□□□□ 0.4
SMPD4-220ENST00000491319 ZC3H11AO75152 810 aaKnown RBP eCLIP17.58■□□□□ 0.4
SMPD4-220ENST00000491319 YWHABP31946 246 aaKnown RBP17.58■□□□□ 0.4
SMPD4-220ENST00000491319 KRT2P35908 639 aa17.58■□□□□ 0.4
SMPD4-220ENST00000491319 BCAR1P56945 870 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms