RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 CCDC110Q8TBZ0 833 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 PABPC3Q9H361 631 aaKnown RBP13.78□□□□□ -0.2
SHOX2-205ENST00000490689 SLAIN2Q9P270 581 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 ALG6Q9Y672 507 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.78□□□□□ -0.2
SHOX2-205ENST00000490689 PLS3P13797 630 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 CD19P15391 556 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 SDCCAG8Q86SQ7 713 aaPredicted RBP13.78□□□□□ -0.2
SHOX2-205ENST00000490689 DYDC2Q96IM9 177 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 SERPINB13Q9UIV8 391 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 F8VZ95 297 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 CLDN3O15551 220 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 ESRRAP11474 423 aaPredicted RBP13.78□□□□□ -0.2
SHOX2-205ENST00000490689 SOX5P35711 763 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 ITIH3Q06033 890 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 PSMD6Q15008 389 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 RAB3IL1Q8TBN0 382 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 MIEF2Q96C03 454 aa13.78□□□□□ -0.2
SHOX2-205ENST00000490689 CALR3Q96L12 384 aaKnown RBP13.78□□□□□ -0.2
SHOX2-205ENST00000490689 MIF4GDA9UHW6 222 aaKnown RBP13.77□□□□□ -0.2
SHOX2-205ENST00000490689 GYG2O15488 501 aa13.77□□□□□ -0.2
SHOX2-205ENST00000490689 CASP4P49662 377 aa13.77□□□□□ -0.2
SHOX2-205ENST00000490689 KRT17Q04695 432 aa13.77□□□□□ -0.2
SHOX2-205ENST00000490689 C4orf33Q8N1A6 199 aa13.77□□□□□ -0.2
SHOX2-205ENST00000490689 AMNQ9BXJ7 453 aa13.77□□□□□ -0.2
SHOX2-205ENST00000490689 CNOT8Q9UFF9 292 aaKnown RBP13.77□□□□□ -0.2
SHOX2-205ENST00000490689 SPATA31D1Q6ZQQ2 1576 aa13.77□□□□□ -0.2
SHOX2-205ENST00000490689 GOLGA8RI6L899 631 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 CPP00450 1065 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 SSTR3P32745 418 aaPredicted RBP13.77□□□□□ -0.21
SHOX2-205ENST00000490689 SPARCL1Q14515 664 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 MIER3Q7Z3K6 550 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 NUP85Q9BW27 656 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 FAM129AQ9BZQ8 928 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 RAB20Q9NX57 234 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 MAD2L2Q9UI95 211 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 SIK3Q9Y2K2 1263 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 AGLP35573 1532 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 SHOX2O60902 331 aaPredicted RBP13.77□□□□□ -0.21
SHOX2-205ENST00000490689 NQO1P15559 274 aaKnown RBP13.77□□□□□ -0.21
SHOX2-205ENST00000490689 CACNB3P54284 484 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 YWHAGP61981 247 aaKnown RBP eCLIP13.77□□□□□ -0.21
SHOX2-205ENST00000490689 PREPLQ4J6C6 727 aaPredicted RBP13.77□□□□□ -0.21
SHOX2-205ENST00000490689 ZC2HC1CQ53FD0 456 aaPredicted RBP13.77□□□□□ -0.21
SHOX2-205ENST00000490689 GPATCH4Q5T3I0 446 aaKnown RBP13.77□□□□□ -0.21
SHOX2-205ENST00000490689 BSPRYQ5W0U4 402 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 SLC30A5Q8TAD4 765 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 RSAD2Q8WXG1 361 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 MAML1Q92585 1016 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 RNF25Q96BH1 459 aaPredicted RBP13.77□□□□□ -0.21
SHOX2-205ENST00000490689 MAK16Q9BXY0 300 aaKnown RBP13.77□□□□□ -0.21
SHOX2-205ENST00000490689 ANAPC4Q9UJX5 808 aa13.77□□□□□ -0.21
SHOX2-205ENST00000490689 DCDC2CA8MYV0 355 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 GDF11O95390 407 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 FLT3P36888 993 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 IRX4P78413 519 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 DNAJC3Q13217 504 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 DHX34Q14147 1143 aaKnown RBP13.76□□□□□ -0.21
SHOX2-205ENST00000490689 KCNV1Q6PIU1 500 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 TMC3Q7Z5M5 1100 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 ZNF564Q8TBZ8 553 aaPredicted RBP13.76□□□□□ -0.21
SHOX2-205ENST00000490689 THAP2Q9H0W7 228 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 BATF3Q9NR55 127 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 ABCF3Q9NUQ8 709 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 ZFP69BQ9UJL9 534 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 DIP2BQ9P265 1576 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 DESP17661 470 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 FGFR2P21802 821 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 CCND1P24385 295 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 ICA1Q05084 483 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 SEMA3FQ13275 785 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 BBS9Q3SYG4 887 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 CEP128Q6ZU80 1094 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 ADGRF4Q8IZF3 695 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 TTC17Q96AE7 1141 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 NT5C1BQ96P26 610 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 REEP2Q9BRK0 252 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 INTS2Q9H0H0 1204 aaKnown RBP13.76□□□□□ -0.21
SHOX2-205ENST00000490689 TACC3Q9Y6A5 838 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 TARSP26639 723 aaKnown RBP13.76□□□□□ -0.21
SHOX2-205ENST00000490689 SERPINB6P35237 376 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 COPS2P61201 443 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 SATB1Q01826 763 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 CERKLQ49MI3 558 aaPredicted RBP13.76□□□□□ -0.21
SHOX2-205ENST00000490689 TTC1Q99614 292 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 TXNDC16Q9P2K2 825 aa13.76□□□□□ -0.21
SHOX2-205ENST00000490689 MFAP3P55082 362 aa13.75□□□□□ -0.21
SHOX2-205ENST00000490689 IRX1P78414 480 aaPredicted RBP13.75□□□□□ -0.21
SHOX2-205ENST00000490689 ARHGAP4P98171 946 aa13.75□□□□□ -0.21
SHOX2-205ENST00000490689 PDIA5Q14554 519 aa13.75□□□□□ -0.21
SHOX2-205ENST00000490689 EAPPQ56P03 285 aaPredicted RBP13.75□□□□□ -0.21
SHOX2-205ENST00000490689 CASC4Q6P4E1 433 aa13.75□□□□□ -0.21
SHOX2-205ENST00000490689 KCNK18Q7Z418 384 aa13.75□□□□□ -0.21
SHOX2-205ENST00000490689 PASD1Q8IV76 773 aa13.75□□□□□ -0.21
SHOX2-205ENST00000490689 MIPOL1Q8TD10 442 aa13.75□□□□□ -0.21
SHOX2-205ENST00000490689 FBXO41Q8TF61 875 aa13.75□□□□□ -0.21
SHOX2-205ENST00000490689 C1orf112Q9NSG2 853 aa13.75□□□□□ -0.21
SHOX2-205ENST00000490689 MEGF6O75095 1541 aa13.75□□□□□ -0.21
SHOX2-205ENST00000490689 SHBGP04278 402 aa13.75□□□□□ -0.21
SHOX2-205ENST00000490689 ELF3P78545 371 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms