RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 PHKA2P46019 1235 aa19.26■□□□□ 0.67
MDC1-206ENST00000489540 PTPAQ15257 358 aa19.26■□□□□ 0.67
MDC1-206ENST00000489540 PCBP1Q15365 356 aaKnown RBP eCLIP19.26■□□□□ 0.676e-6■■■■□ 23.6
MDC1-206ENST00000489540 FAM173BQ6P4H8 233 aa19.26■□□□□ 0.67
MDC1-206ENST00000489540 CATSPER4Q7RTX7 472 aa19.26■□□□□ 0.67
MDC1-206ENST00000489540 SPRYD3Q8NCJ5 442 aa19.26■□□□□ 0.67
MDC1-206ENST00000489540 MYLIPQ8WY64 445 aa19.26■□□□□ 0.67
MDC1-206ENST00000489540 GAS2L1Q99501 681 aaPredicted RBP19.26■□□□□ 0.67
MDC1-206ENST00000489540 POLR3FQ9H1D9 316 aaPredicted RBP19.26■□□□□ 0.67
MDC1-206ENST00000489540 PRDM12Q9H4Q4 367 aa19.26■□□□□ 0.67
MDC1-206ENST00000489540 ELAC1Q9H777 363 aaKnown RBP19.26■□□□□ 0.67
MDC1-206ENST00000489540 ARHGEF15O94989 841 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 GLRA2P23416 452 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 UBA7P41226 1012 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 PTENP60484 403 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 ERVK-21P61565 698 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 ZRSR1Q15695 479 aaKnown RBP19.25■□□□□ 0.67
MDC1-206ENST00000489540 FAM102BQ5T8I3 360 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 MAEAQ7L5Y9 396 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 ASAP3Q8TDY4 903 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 ZNF689Q96CS4 500 aaPredicted RBP19.25■□□□□ 0.67
MDC1-206ENST00000489540 CDK5RAP3Q96JB5 506 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 MORC2Q9Y6X9 1032 aaPredicted RBP19.25■□□□□ 0.67
MDC1-206ENST00000489540 E9PMD0 336 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 ZSCAN22P10073 491 aaPredicted RBP19.25■□□□□ 0.67
MDC1-206ENST00000489540 FOSL2P15408 326 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 CABP7Q86V35 215 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 IFNLR1Q8IU57 520 aaPredicted RBP19.25■□□□□ 0.67
MDC1-206ENST00000489540 FIBCD1Q8N539 461 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 ARNTL2Q8WYA1 636 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 ZNF396Q96N95 335 aaPredicted RBP19.25■□□□□ 0.67
MDC1-206ENST00000489540 SAMD11Q96NU1 681 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 TRAIPQ9BWF2 469 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 NFKBIZQ9BYH8 718 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 CERS4Q9HA82 394 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 GPRC5CQ9NQ84 441 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 TMEM161AQ9NX61 479 aa19.25■□□□□ 0.67
MDC1-206ENST00000489540 SRPRBQ9Y5M8 271 aaKnown RBP19.25■□□□□ 0.67
MDC1-206ENST00000489540 A0A0U1RQF3 1178 aa19.24■□□□□ 0.67
MDC1-206ENST00000489540 SKIP12755 728 aa19.24■□□□□ 0.67
MDC1-206ENST00000489540 CEBPZQ03701 1054 aaKnown RBP19.24■□□□□ 0.67
MDC1-206ENST00000489540 NCBP1Q09161 790 aaKnown RBP19.24■□□□□ 0.67
MDC1-206ENST00000489540 CAPSQ13938 189 aa19.24■□□□□ 0.67
MDC1-206ENST00000489540 BECN1Q14457 450 aa19.24■□□□□ 0.67
MDC1-206ENST00000489540 SLC39A14Q15043 492 aa19.24■□□□□ 0.67
MDC1-206ENST00000489540 CALML4Q96GE6 196 aa19.24■□□□□ 0.67
MDC1-206ENST00000489540 PNMA5Q96PV4 448 aa19.24■□□□□ 0.67
MDC1-206ENST00000489540 RC3H2Q9HBD1 1191 aaKnown RBP19.24■□□□□ 0.67
MDC1-206ENST00000489540 PIN4Q9Y237 131 aaKnown RBP19.24■□□□□ 0.67
MDC1-206ENST00000489540 LAMA2P24043 3122 aaKnown RBP19.23■□□□□ 0.67
MDC1-206ENST00000489540 SIP14410 1827 aa19.23■□□□□ 0.67
MDC1-206ENST00000489540 MICAL3Q7RTP6 2002 aa19.23■□□□□ 0.67
MDC1-206ENST00000489540 EOMESO95936 686 aa19.23■□□□□ 0.67
MDC1-206ENST00000489540 MARCKSP29966 332 aaPredicted RBP19.23■□□□□ 0.67
MDC1-206ENST00000489540 GRB10Q13322 594 aa19.23■□□□□ 0.67
MDC1-206ENST00000489540 BTG3Q14201 252 aaPredicted RBP19.23■□□□□ 0.67
MDC1-206ENST00000489540 ECHDC2Q86YB7 292 aa19.23■□□□□ 0.67
MDC1-206ENST00000489540 CMTR2Q8IYT2 770 aaKnown RBP19.23■□□□□ 0.67
MDC1-206ENST00000489540 KIFAP3Q92845 792 aa19.23■□□□□ 0.67
MDC1-206ENST00000489540 USP28Q96RU2 1077 aa19.23■□□□□ 0.67
MDC1-206ENST00000489540 MINDY3Q9H8M7 445 aa19.23■□□□□ 0.67
MDC1-206ENST00000489540 ADGRA3Q8IWK6 1321 aa19.23■□□□□ 0.67
MDC1-206ENST00000489540 INO80B-WBP1J3KQ70 363 aa19.22■□□□□ 0.67
MDC1-206ENST00000489540 HOXA2O43364 376 aa19.22■□□□□ 0.67
MDC1-206ENST00000489540 IBSPP21815 317 aaPredicted RBP19.22■□□□□ 0.67
MDC1-206ENST00000489540 AXLP30530 894 aa19.22■□□□□ 0.67
MDC1-206ENST00000489540 NASPP49321 788 aaPredicted RBP19.22■□□□□ 0.67
MDC1-206ENST00000489540 PPP2R5AQ15172 486 aa19.22■□□□□ 0.67
MDC1-206ENST00000489540 TMEM119Q4V9L6 283 aa19.22■□□□□ 0.67
MDC1-206ENST00000489540 TWF2Q6IBS0 349 aaKnown RBP19.22■□□□□ 0.67
MDC1-206ENST00000489540 AGPAT5Q9NUQ2 364 aa19.22■□□□□ 0.67
MDC1-206ENST00000489540 FBXO2Q9UK22 296 aaPredicted RBP19.22■□□□□ 0.67
MDC1-206ENST00000489540 RWDD3Q9Y3V2 267 aa19.22■□□□□ 0.67
MDC1-206ENST00000489540 TTC3P53804 2025 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 LRRIQ4A6NIV6 560 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 ERLIN2O94905 339 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 F13A1P00488 732 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 NAMPTP43490 491 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 GRIN1Q05586 938 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 RINT1Q6NUQ1 792 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 C1orf186Q6ZWK4 172 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 KCNK18Q7Z418 384 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 SYT2Q8N9I0 419 aaPredicted RBP19.21■□□□□ 0.67
MDC1-206ENST00000489540 IFT74Q96LB3 600 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 PLIN2Q99541 437 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 TIPINQ9BVW5 301 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 CCSER1Q9C0I3 900 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 CSRNP2Q9H175 543 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 C2orf40Q9H1Z8 148 aa19.21■□□□□ 0.67
MDC1-206ENST00000489540 IGFBP4P22692 258 aa19.2■□□□□ 0.66
MDC1-206ENST00000489540 HOXA11P31270 313 aaPredicted RBP19.2■□□□□ 0.66
MDC1-206ENST00000489540 RAB27AP51159 221 aa19.2■□□□□ 0.66
MDC1-206ENST00000489540 MBTD1Q05BQ5 628 aa19.2■□□□□ 0.66
MDC1-206ENST00000489540 ADGRE1Q14246 886 aa19.2■□□□□ 0.66
MDC1-206ENST00000489540 STK38Q15208 465 aa19.2■□□□□ 0.66
MDC1-206ENST00000489540 EPC2Q52LR7 807 aa19.2■□□□□ 0.66
MDC1-206ENST00000489540 FOXD4L5Q5VV16 416 aaPredicted RBP19.2■□□□□ 0.66
MDC1-206ENST00000489540 ATL3Q6DD88 541 aa19.2■□□□□ 0.66
MDC1-206ENST00000489540 SPRED2Q7Z698 418 aa19.2■□□□□ 0.66
MDC1-206ENST00000489540 ZBTB8OSQ8IWT0 167 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms