RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 SLC9A9Q8IVB4 645 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 GOLGA5Q8TBA6 731 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 ASAP3Q8TDY4 903 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 ZNF296Q8WUU4 475 aaPredicted RBP12.64□□□□□ -0.39
C9orf3-220ENST00000489318 KAT2BQ92831 832 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 IFT74Q96LB3 600 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 CNOT6LQ96LI5 555 aaKnown RBP12.64□□□□□ -0.39
C9orf3-220ENST00000489318 NAP1L5Q96NT1 182 aaPredicted RBP12.64□□□□□ -0.39
C9orf3-220ENST00000489318 GBP3Q9H0R5 595 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 KMT5AQ9NQR1 393 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 KAT6AQ92794 2004 aa12.64□□□□□ -0.39
C9orf3-220ENST00000489318 PHLPP2Q6ZVD8 1323 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 EVPLQ92817 2033 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 SLC16A4O15374 487 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 SLC16A3O15427 465 aaKnown RBP12.63□□□□□ -0.39
C9orf3-220ENST00000489318 MAGEB2O15479 319 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 ADCY3O60266 1144 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 ADAMTS4O75173 837 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 GNA14O95837 355 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 NR3C1P04150 777 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 TPM3P06753 285 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 PRKAR2AP13861 404 aaKnown RBP12.63□□□□□ -0.39
C9orf3-220ENST00000489318 CDK11BP21127 795 aaKnown RBP12.63□□□□□ -0.39
C9orf3-220ENST00000489318 NR2F2P24468 414 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 CST5P28325 142 aaPredicted RBP12.63□□□□□ -0.39
C9orf3-220ENST00000489318 HOXC8P31273 242 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 PBX1P40424 430 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 COPB1P53618 953 aaKnown RBP12.63□□□□□ -0.39
C9orf3-220ENST00000489318 MAP2K1Q02750 393 aaPredicted RBP12.63□□□□□ -0.39
C9orf3-220ENST00000489318 TRIM32Q13049 653 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 CAPSQ13938 189 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 NR1I3Q14994 352 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 BRDTQ58F21 947 aaPredicted RBP12.63□□□□□ -0.39
C9orf3-220ENST00000489318 HSP90AA4PQ58FG1 418 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 FILIP1Q7Z7B0 1213 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 ANKRD20A12PQ8NF67 263 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 ACCSQ96QU6 501 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 MKNK1Q9BUB5 465 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 AP5M1Q9H0R1 490 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 AGPAT3Q9NRZ7 376 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 TBX20Q9UMR3 447 aa12.63□□□□□ -0.39
C9orf3-220ENST00000489318 DENND3A2RUS2 1198 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 KPNA6O60684 536 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 PIGRP01833 764 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 ELNP15502 786 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 RPL13P26373 211 aaKnown RBP12.62□□□□□ -0.39
C9orf3-220ENST00000489318 MCCD1P59942 119 aaPredicted RBP12.62□□□□□ -0.39
C9orf3-220ENST00000489318 PURAQ00577 322 aaKnown RBP12.62□□□□□ -0.39
C9orf3-220ENST00000489318 DRP2Q13474 957 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 MXD4Q14582 209 aaPredicted RBP12.62□□□□□ -0.39
C9orf3-220ENST00000489318 FSCN1Q16658 493 aaKnown RBP12.62□□□□□ -0.39
C9orf3-220ENST00000489318 HS2ST1Q7LGA3 356 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 TAS1R3Q7RTX0 852 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 VSTM4Q8IW00 320 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 SLAIN1Q8ND83 568 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 TRAPPC12Q8WVT3 735 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 PSPC1Q8WXF1 523 aaKnown RBP12.62□□□□□ -0.39
C9orf3-220ENST00000489318 TMEM143Q96AN5 459 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 KATNAL1Q9BW62 490 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 NFKBIZQ9BYH8 718 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 TMEM134Q9H6X4 195 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 RTN4Q9NQC3 1192 aaKnown RBP12.62□□□□□ -0.39
C9orf3-220ENST00000489318 DMAC2Q9NW81 257 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 MAGEC2Q9UBF1 373 aaPredicted RBP12.62□□□□□ -0.39
C9orf3-220ENST00000489318 EXOC7Q9UPT5 735 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 NRCAMQ92823 1304 aa12.62□□□□□ -0.39
C9orf3-220ENST00000489318 MBLAC1A4D2B0 266 aaPredicted RBP12.61□□□□□ -0.39
C9orf3-220ENST00000489318 RRN3P2A6NIE6 340 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 CCDC169A6NNP5 214 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 LGALS16A8MUM7 142 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 CETN3O15182 167 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 ASAP2O43150 1006 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 RARBP10826 455 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 ADAM17P78536 824 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 POU5F1BQ06416 359 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 PPFIA1Q13136 1202 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 ADAM9Q13443 819 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 MFSD10Q14728 455 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 GRIK4Q16099 956 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 MAN2A1Q16706 1144 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 FILIP1LQ4L180 1135 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 HS1BP3Q53T59 392 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 MIIPQ5JXC2 388 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 MARCH8Q5T0T0 291 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 MTHFD1LQ6UB35 978 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 IFNLR1Q8IU57 520 aaPredicted RBP12.61□□□□□ -0.39
C9orf3-220ENST00000489318 KSR1Q8IVT5 923 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 TRIM59Q8IWR1 403 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 RETREG2Q8NC44 543 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 TUBGCP2Q9BSJ2 902 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 KIFC3Q9BVG8 833 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 CCDC113Q9H0I3 377 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 TAB2Q9NYJ8 693 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 IMPACTQ9P2X3 320 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 ITIH6Q6UXX5 1313 aa12.61□□□□□ -0.39
C9orf3-220ENST00000489318 MYADML2A6NDP7 307 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 MAPK13O15264 365 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 SMIM10L2AP0DMW4 78 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 SMIM10L2BP0DMW5 78 aa12.6□□□□□ -0.39
C9orf3-220ENST00000489318 CCND3P30281 292 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms