RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 CAPSQ13938 189 aa15.49■□□□□ 0.07
SYNE1-226ENST00000488376 LONRF3Q496Y0 759 aa15.49■□□□□ 0.07
SYNE1-226ENST00000488376 RILPL1Q5EBL4 403 aa15.49■□□□□ 0.07
SYNE1-226ENST00000488376 ODR4Q5SWX8 454 aa15.49■□□□□ 0.07
SYNE1-226ENST00000488376 ECHDC2Q86YB7 292 aa15.49■□□□□ 0.07
SYNE1-226ENST00000488376 RNF149Q8NC42 400 aa15.49■□□□□ 0.07
SYNE1-226ENST00000488376 CLP1Q92989 425 aaKnown RBP15.49■□□□□ 0.07
SYNE1-226ENST00000488376 POLR3FQ9H1D9 316 aaPredicted RBP15.49■□□□□ 0.07
SYNE1-226ENST00000488376 ATP6V0A4Q9HBG4 840 aa15.49■□□□□ 0.07
SYNE1-226ENST00000488376 TBKBP1A7MCY6 615 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 MEIS3P2A8K0S8 358 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 H3BNC9 293 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 DGAT1O75907 488 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 CSPG5O95196 566 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 GLRA2P23416 452 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 ARL2P36404 184 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 BMPR1AP36894 532 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 CLLU1OSQ5K130 101 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 FAM173BQ6P4H8 233 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 CATSPER4Q7RTX7 472 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 KCNK18Q7Z418 384 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 ZNF598Q86UK7 904 aaKnown RBP15.48■□□□□ 0.07
SYNE1-226ENST00000488376 CMTR2Q8IYT2 770 aaKnown RBP15.48■□□□□ 0.07
SYNE1-226ENST00000488376 ZNF710Q8N1W2 664 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 RNF169Q8NCN4 708 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 ERMNQ8TAM6 284 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 TCP11Q8WWU5 503 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 TMEM161AQ9NX61 479 aa15.48■□□□□ 0.07
SYNE1-226ENST00000488376 DBR1Q9UK59 544 aaKnown RBP15.48■□□□□ 0.07
SYNE1-226ENST00000488376 PIN4Q9Y237 131 aaKnown RBP15.48■□□□□ 0.07
SYNE1-226ENST00000488376 GRM6O15303 877 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 GTPBP6O43824 516 aaPredicted RBP15.47■□□□□ 0.07
SYNE1-226ENST00000488376 GAS2O43903 313 aaKnown RBP15.47■□□□□ 0.07
SYNE1-226ENST00000488376 ZSCAN20P17040 1043 aaPredicted RBP15.47■□□□□ 0.07
SYNE1-226ENST00000488376 SYT1P21579 422 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 SFPQP23246 707 aaKnown RBP eCLIP15.47■□□□□ 0.07
SYNE1-226ENST00000488376 HOXA11P31270 313 aaPredicted RBP15.47■□□□□ 0.07
SYNE1-226ENST00000488376 PRPHP41219 470 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 CDC42EP1Q00587 391 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 GRIN1Q05586 938 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 GPM6BQ13491 265 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 LRRC55Q6ZSA7 311 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 SNX29Q8TEQ0 813 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 BSNDQ8WZ55 320 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 LPPQ93052 612 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 CCDC43Q96MW1 224 aaKnown RBP15.47■□□□□ 0.07
SYNE1-226ENST00000488376 CASD1Q96PB1 797 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 NACC1Q96RE7 527 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 DDX19AQ9NUU7 478 aaKnown RBP15.47■□□□□ 0.07
SYNE1-226ENST00000488376 KIAA1024Q9UPX6 916 aa15.47■□□□□ 0.07
SYNE1-226ENST00000488376 A0A0U1RQF3 1178 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 VWA3AA6NCI4 1184 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 E9PMD0 336 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 C5orf67F2Z3F1 127 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 LAD1O00515 517 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 XRCC6P12956 609 aaKnown RBP eCLIP15.46■□□□□ 0.07
SYNE1-226ENST00000488376 DNAJB1P25685 340 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 PTENP60484 403 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 RESTQ13127 1097 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 PDIA5Q14554 519 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 PADI6Q6TGC4 694 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 DTHD1Q6ZMT9 781 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 EXOC8Q8IYI6 725 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 SNX21Q969T3 373 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 SAMD11Q96NU1 681 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 PLIN2Q99541 437 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 BHMT2Q9H2M3 363 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 ELAC1Q9H777 363 aaKnown RBP15.46■□□□□ 0.07
SYNE1-226ENST00000488376 ALG13Q9NP73 1137 aaKnown RBP15.46■□□□□ 0.07
SYNE1-226ENST00000488376 AGPAT5Q9NUQ2 364 aa15.46■□□□□ 0.07
SYNE1-226ENST00000488376 TYW1Q9NV66 732 aaKnown RBP15.46■□□□□ 0.07
SYNE1-226ENST00000488376 ARHGEF35A5YM69 484 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 B4GALT5O43286 388 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 TSPAN1O60635 241 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 PBX3P40426 434 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 PHKA2P46019 1235 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 TFF2Q03403 129 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 MBTD1Q05BQ5 628 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 CAMK1Q14012 370 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 AMHR2Q16671 573 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 UBXN11Q5T124 520 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 HAUS3Q68CZ6 603 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 TWF2Q6IBS0 349 aaKnown RBP15.45■□□□□ 0.06
SYNE1-226ENST00000488376 BRAPQ7Z569 592 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 SRGAP1Q7Z6B7 1085 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 HELQQ8TDG4 1101 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 INTS4Q96HW7 963 aaKnown RBP15.45■□□□□ 0.06
SYNE1-226ENST00000488376 CPB2Q96IY4 423 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 PNMA5Q96PV4 448 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 CWH43Q9H720 699 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 MTMR6Q9Y217 621 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 CLIC4Q9Y696 253 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 KIAA1671Q9BY89 1806 aa15.45■□□□□ 0.06
SYNE1-226ENST00000488376 PRRC2BQ5JSZ5 2229 aaKnown RBP15.44■□□□□ 0.06
SYNE1-226ENST00000488376 NLRC5Q86WI3 1866 aa15.44■□□□□ 0.06
SYNE1-226ENST00000488376 TTLL13PA6NNM8 815 aa15.44■□□□□ 0.06
SYNE1-226ENST00000488376 ASAP2O43150 1006 aa15.44■□□□□ 0.06
SYNE1-226ENST00000488376 ITGB1P05556 798 aa15.44■□□□□ 0.06
SYNE1-226ENST00000488376 CYP11B2P19099 503 aa15.44■□□□□ 0.06
SYNE1-226ENST00000488376 MXD4Q14582 209 aaPredicted RBP15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms