RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CHD9Q3L8U1 2897 aa16.4■□□□□ 0.22
USP4-212ENST00000486549 DLL1O00548 723 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 ARHGEF15O94989 841 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 PDIA4P13667 645 aaKnown RBP16.39■□□□□ 0.21
USP4-212ENST00000486549 SFPQP23246 707 aaKnown RBP eCLIP16.39■□□□□ 0.21
USP4-212ENST00000486549 LONP1P36776 959 aaKnown RBP16.39■□□□□ 0.21
USP4-212ENST00000486549 UBA7P41226 1012 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 GRB10Q13322 594 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 STK38Q15208 465 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 SPECC1Q5M775 1068 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 CATSPER4Q7RTX7 472 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 KCNK18Q7Z418 384 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 MCPH1Q8NEM0 835 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 RASSF8Q8NHQ8 419 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 ZNF396Q96N95 335 aaPredicted RBP16.39■□□□□ 0.21
USP4-212ENST00000486549 PNMA5Q96PV4 448 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 INO80BQ9C086 356 aaPredicted RBP16.39■□□□□ 0.21
USP4-212ENST00000486549 PRDM12Q9H4Q4 367 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 CERS4Q9HA82 394 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 IFT122Q9HBG6 1241 aa16.39■□□□□ 0.21
USP4-212ENST00000486549 DAXXQ9UER7 740 aaPredicted RBP16.39■□□□□ 0.21
USP4-212ENST00000486549 ASAP2O43150 1006 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 EYA4O95677 639 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 SSBP05455 408 aaKnown RBP eCLIP16.38■□□□□ 0.21
USP4-212ENST00000486549 ZSCAN20P17040 1043 aaPredicted RBP16.38■□□□□ 0.21
USP4-212ENST00000486549 CYP11B2P19099 503 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 GLRA2P23416 452 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 ARL2P36404 184 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 PHKA2P46019 1235 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 CAPSQ13938 189 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 TFDP1Q14186 410 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 MXD4Q14582 209 aaPredicted RBP16.38■□□□□ 0.21
USP4-212ENST00000486549 CALML4Q96GE6 196 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 NT5C3AQ9H0P0 336 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 CSRNP2Q9H175 543 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 POLD4Q9HCU8 107 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 RGS18Q9NS28 235 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 TFIP11Q9UBB9 837 aaKnown RBP16.38■□□□□ 0.21
USP4-212ENST00000486549 FBXO2Q9UK22 296 aaPredicted RBP16.38■□□□□ 0.21
USP4-212ENST00000486549 LRFN2Q9ULH4 789 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 INSL6Q9Y581 213 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 MYO9BQ13459 2157 aa16.38■□□□□ 0.21
USP4-212ENST00000486549 LRRIQ4A6NIV6 560 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 SARSP49591 514 aaKnown RBP16.37■□□□□ 0.21
USP4-212ENST00000486549 HTRA4P83105 476 aaPredicted RBP16.37■□□□□ 0.21
USP4-212ENST00000486549 TAP1Q03518 808 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 DSC3Q14574 896 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 SLC39A14Q15043 492 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 KARSQ15046 597 aaKnown RBP16.37■□□□□ 0.21
USP4-212ENST00000486549 TMEM119Q4V9L6 283 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 HYIQ5T013 277 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 SPRED2Q7Z698 418 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 SRGAP1Q7Z6B7 1085 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 NPAS4Q8IUM7 802 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 SYMPKQ92797 1274 aaKnown RBP16.37■□□□□ 0.21
USP4-212ENST00000486549 CLIC6Q96NY7 704 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 MINDY3Q9H8M7 445 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 C1orf112Q9NSG2 853 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 MTUS1Q9ULD2 1270 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 PIN4Q9Y237 131 aaKnown RBP16.37■□□□□ 0.21
USP4-212ENST00000486549 NLRC5Q86WI3 1866 aa16.37■□□□□ 0.21
USP4-212ENST00000486549 LINC01553A4QN01 128 aa16.36■□□□□ 0.21
USP4-212ENST00000486549 INO80B-WBP1J3KQ70 363 aa16.36■□□□□ 0.21
USP4-212ENST00000486549 GTPBP6O43824 516 aaPredicted RBP16.36■□□□□ 0.21
USP4-212ENST00000486549 STAG3L1P0CL83 205 aa16.36■□□□□ 0.21
USP4-212ENST00000486549 IGFBP4P22692 258 aa16.36■□□□□ 0.21
USP4-212ENST00000486549 NASPP49321 788 aaPredicted RBP16.36■□□□□ 0.21
USP4-212ENST00000486549 FAM43BQ6ZT52 329 aaPredicted RBP16.36■□□□□ 0.21
USP4-212ENST00000486549 SLC24A5Q71RS6 500 aa16.36■□□□□ 0.21
USP4-212ENST00000486549 EPSTI1Q96J88 318 aa16.36■□□□□ 0.21
USP4-212ENST00000486549 RUSC1Q9BVN2 902 aa16.36■□□□□ 0.21
USP4-212ENST00000486549 PCDHB7Q9Y5E2 793 aa16.36■□□□□ 0.21
USP4-212ENST00000486549 SRPRBQ9Y5M8 271 aaKnown RBP16.36■□□□□ 0.21
USP4-212ENST00000486549 COL4A4P53420 1690 aaPredicted RBP16.35■□□□□ 0.21
USP4-212ENST00000486549 C9IYK1 514 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 SPTLC2O15270 562 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 ERLIN2O94905 339 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 PLCG1P19174 1290 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 GATMP50440 423 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 PTENP60484 403 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 RAD51AP2Q09MP3 1159 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 DHX8Q14562 1220 aaKnown RBP16.35■□□□□ 0.21
USP4-212ENST00000486549 PAN2Q504Q3 1202 aaKnown RBP16.35■□□□□ 0.21
USP4-212ENST00000486549 TWF2Q6IBS0 349 aaKnown RBP16.35■□□□□ 0.21
USP4-212ENST00000486549 USP49Q70CQ1 688 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 KRI1Q8N9T8 703 aaKnown RBP16.35■□□□□ 0.21
USP4-212ENST00000486549 RNF169Q8NCN4 708 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 LINC00301Q8NCQ3 95 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 ARNTL2Q8WYA1 636 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 BSNDQ8WZ55 320 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 ADGRA3Q8IWK6 1321 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 CDH23Q9H251 3354 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 MYH11P35749 1972 aa16.35■□□□□ 0.21
USP4-212ENST00000486549 COL4A6Q14031 1691 aa16.34■□□□□ 0.21
USP4-212ENST00000486549 CHD7Q9P2D1 2997 aa16.34■□□□□ 0.21
USP4-212ENST00000486549 FNDC1Q4ZHG4 1894 aaPredicted RBP16.34■□□□□ 0.21
USP4-212ENST00000486549 SLC26A4O43511 780 aa16.34■□□□□ 0.21
USP4-212ENST00000486549 BRD1O95696 1058 aa16.34■□□□□ 0.21
USP4-212ENST00000486549 PLA2G4BP0C869 781 aa16.34■□□□□ 0.21
USP4-212ENST00000486549 MBTD1Q05BQ5 628 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms